Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g1469 ATGGAGTCAGATCTTGAGCAGCACTCTTCAATGTTACATGGTCATCATCATCATCAGCAGCAGCAGATGAATTCTTCTGGTTTGACGCGGTATCGGTCGGCTCCAAGCTCGTATTTTACGAATATCATAGACAAGGAATTTTATGAGGACATGTTCAATCGGCCTTCCAGCCCCGAAACAGAGCGAATTTTTTCACGGTTTATGAATAGCCTCGCTAATGAGTCAGAAGACGCACCGGCTCAATATCTTTCCTCTGTTAGACAAAATTCTGCAGTGAAGGAAGAAGAGATGGACCAGCAGTCTCAGGTTATGCCTCCCGTGAACAATGAACCGATGGCTCTCCACCAGCCGCCGCAGAACAGTATTAGTAATTTTGTTTCTGCTCCGCAGAATCTTTTCCAAAGCTCAGGTCGTCCACCTTTGCCCAATCAGAGCCTGACTTCATCAGCTATGGATGGAGTCTATTCGAGGGGAGGTCACCGGTTGTCACATGTGAAGGCTCCTGATGCAAATAATTCCAATCTAATCAGGCACAATAGCTCACCTGCAGGACTCTTTTCCACCATAAACATTGAAAGCTATGCTTCTATGAGAGGCACAGGCATATTGGGAGCTGGTACTGACACGAGCGAAGAAGCAAGCTTCTCTTCCGCAATGAGGATGAAAAATCCGCCAAAATACTCGACAGGCGTAATGTCATCCATAGCTGAAGTTGGGGACAAAGGCGACGCAGAACATAATCAAGACACTGAATCTTTTGCTGAAAGCAAAGGTAATGAGTTCATCACAGGTTTTCCCCCTTGGGACGATTCTGTACTCATGTCTGACAATACTGCTGGAGTAAAAAGATTTAGAGACGAGGATGCAAAAACATTTTCTGAGACTCAGAATGAGACGGGCAGCCAGCCACGTCCCGCTCCTCTGGCTCATCACCTCAGTTTGCCAAAAACTTCAGCGGAAATGGCAGCCATTGAAAAGTTTCTGCAGTTCTCAGATTCTGTTCCCTGTAAAATTCGTGCCAAGAGAGGCTGTGCTACTCACCCAAGAAGCATTGCAGAGAGGGTCAGAAGAACTAAGATCAGTGAGCGTATGAGGAAACTACAAGATCTGGTCCCCAACATGGACAAACAAACAAACACAGCAGACATGTTGGACTTGGCTGTCGACTACATTAAAGGCCTCCAACAGCAGGTTGAGACGCTTTCGGACAGTCACGCGAAGTGCACGTGTCCACACAAGCAGAGGCAGTAA 1251 0.4684 MESDLEQHSSMLHGHHHHQQQQMNSSGLTRYRSAPSSYFTNIIDKEFYEDMFNRPSSPETERIFSRFMNSLANESEDAPAQYLSSVRQNSAVKEEEMDQQSQVMPPVNNEPMALHQPPQNSISNFVSAPQNLFQSSGRPPLPNQSLTSSAMDGVYSRGGHRLSHVKAPDANNSNLIRHNSSPAGLFSTINIESYASMRGTGILGAGTDTSEEASFSSAMRMKNPPKYSTGVMSSIAEVGDKGDAEHNQDTESFAESKGNEFITGFPPWDDSVLMSDNTAGVKRFRDEDAKTFSETQNETGSQPRPAPLAHHLSLPKTSAEMAAIEKFLQFSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVDYIKGLQQQVETLSDSHAKCTCPHKQRQ 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g1469 416 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 347 409 IPR036638 GO:0046983
Lele31g1469 416 MobiDBLite consensus disorder prediction 16 31 - -
Lele31g1469 416 Gene3D - 345 414 IPR036638 GO:0046983
Lele31g1469 416 SMART finulus 350 400 IPR011598 GO:0046983
Lele31g1469 416 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 79 410 - -
Lele31g1469 416 Pfam Helix-loop-helix DNA-binding domain 349 395 IPR011598 GO:0046983
Lele31g1469 416 FunFam Transcription factor bHLH130 family 345 414 - -
Lele31g1469 416 MobiDBLite consensus disorder prediction 1 31 - -
Lele31g1469 416 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 344 394 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g1469 Lele-ChrLele31 20076751 20079101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g1469 1 410 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 40.416 5.57e-76 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele31g1469 HLH 9.2e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0079 29 469194 470787 Lele31g1469 31 20076751 20079101 hybridization
Lele30g1317 30 15532067 15534409 Lele31g1469 31 20076751 20079101 hybridization