Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g1463 ATGACCCATCCCTCCTTCCCCAATCATTTCAATCCCTGGTTGGACCTCAATTCTCCTTACTCCCTCCTCTCTTCTTCTTCTGGCACCAATCCACCTTCCTATAATTTTGTCTCTGCTCAACATCACTGCACGAATGGCACCTCTCATATCCCTCCTCCCTACCACCAATCCTTGCCTTCCTCCCCTCCAGCTGTAAGAGAGCCCCTTCCTCTTCTTCAACTTAGCCCTTCCACTCCTCACGATCCGCAATCTTCCTGCGCTTCCATGGAAATTAATGACAAGAACAAAGACTTGGATGACCAATCTGTGACGGTGGCTTTAAGCTTAGGGCTTCCAAGCGTGGATTCAACTGATTTAGTTTCAGACCAAGAACAAGTCACCGTCGCTTCTGCGTCTCCATCTACTGGGATGAATAGGGGTAAGTACTGGATCCCTACCCCCACTCAGATTCTGATCGGTCCGACGCAGTTCTCGTGCCCTCTTTGTTTCAAGACGTTCAACAGATACAACAACATGCAGATGCATATGTGGGGACATGGATCTGAATATAGAAAGGGGCCAGAGTCTCTGAGGGGGACGCAGCCAACAGCGATGATTAGGCTGCCTTGCTATTGTTGCGCAGCAGGATGCAAGAACAACATTGAGCATCCCAGGGCCAAACCACTCAAAGACTTCCGAACCCTTCAGACCCATTACAAGCGAAAGCACGGCATGAAGCCTTTCATGTGCAGAAAATGCTGCAAGTCCTTTGCCGTGAGAGGTGATTGGAGGACCCATGAGAAGAATTGCGGCAAGCTCTGGTACTGCTCTTGTGGCTCTGATTTCAAGCACAAGAGATCTCTCAAAGATCATATCAAGGCCTTTGGACATGCCCACACCGCTTGCGCCATTCATTCTCTTGATCAAGATGATGAACCTGCCTCTGAAATCGATCAAGAAAATCAACCCTTCCACTACTAA 960 0.4896 MTHPSFPNHFNPWLDLNSPYSLLSSSSGTNPPSYNFVSAQHHCTNGTSHIPPPYHQSLPSSPPAVREPLPLLQLSPSTPHDPQSSCASMEINDKNKDLDDQSVTVALSLGLPSVDSTDLVSDQEQVTVASASPSTGMNRGKYWIPTPTQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSEYRKGPESLRGTQPTAMIRLPCYCCAAGCKNNIEHPRAKPLKDFRTLQTHYKRKHGMKPFMCRKCCKSFAVRGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIKAFGHAHTACAIHSLDQDDEPASEIDQENQPFHY 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g1463 319 SUPERFAMILY beta-beta-alpha zinc fingers 223 261 IPR036236 -
Lele31g1463 319 MobiDBLite consensus disorder prediction 45 88 - -
Lele31g1463 319 FunFam Zinc finger protein WIP2 210 292 - -
Lele31g1463 319 SUPERFAMILY beta-beta-alpha zinc fingers 152 180 IPR036236 -
Lele31g1463 319 Gene3D Classic Zinc Finger 156 179 - -
Lele31g1463 319 ProSitePatterns Zinc finger C2H2 type domain signature. 159 179 IPR013087 -
Lele31g1463 319 ProSiteProfiles Zinc finger C2H2 type domain profile. 157 184 IPR013087 -
Lele31g1463 319 PANTHER ZINC FINGER PROTEIN WIP2 41 315 IPR043584 GO:0003700|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g1463 Lele-ChrLele31 20038999 20041064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g1463 1 312 C2H2 Transcription Factor Family AT1G51220 56.000 8.59e-119 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele31g1463 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0086 29 508545 510616 Lele31g1463 31 20038999 20041064 hybridization
Lele30g1310 30 15487962 15490084 Lele31g1463 31 20038999 20041064 hybridization