Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g1462 ATGCTTGAACTTGACTGTAAGTTTCACGCTGCAGAGCAATTGTCTGAGAAAGAATTCAAAATGAGTTGGAACACAAACATGGAGGTCCACTACAACAATATCAGCTACCCCTACAATACAGCAGGAAGCTTTATTGAATATTTTGAAGGTCTAACCTACGAACACGTCAATTTCATTTTTTCTGGTGCTTCTCATGCTCAGGAGAGCTTGTACCCATCAACTACAAGTTTATACAAGTTTGGCCTATCTGAGCCTGAGAATACTTCATACTATCGTTACAGTGATGGTTATGAGGTGAATAATCATGACCCTCGGATGGATGAGCACAGAAGGCCTTTAGAGAACCCAGCAATATTTAGTGAACATACTGCAGCAGCAAGTACAGAATGGGGTGAAGGTGTAAACGCCACTGCACGAGACAATTCTGTTGAGTGCCCAAGAAGACATCATAATGCCCATGACTATCAGGTCGCTTGGCACGACAATATTGATCCTGACCACATGTCCTATGAGGAATTACTTGAGTTGGGTGAGGCTGTTGGAACTCAAAGCCGTGGTCTCTCCCAAGAACAGATCTCTTTGCTTCCAGTTTCAAAGTACAAGTGTGGGTTTTTTTTACGCAAAAAATCACGGGATGAGAGATGTGTGATTTGCCAGATGGAATATAGGAGAGGGGAAAAACGGATCACCTTACCTTGCAAACATGTCTATCATGCTGGTTGTGCGACAACATGGCTTAGCATCAACAAGGCTTGCCCTATATGTTACATGGAGGTGTTTGCTGATATGTCAAAACGCAAATGA 804 0.4279 MLELDCKFHAAEQLSEKEFKMSWNTNMEVHYNNISYPYNTAGSFIEYFEGLTYEHVNFIFSGASHAQESLYPSTTSLYKFGLSEPENTSYYRYSDGYEVNNHDPRMDEHRRPLENPAIFSEHTAAASTEWGEGVNATARDNSVECPRRHHNAHDYQVAWHDNIDPDHMSYEELLELGEAVGTQSRGLSQEQISLLPVSKYKCGFFLRKKSRDERCVICQMEYRRGEKRITLPCKHVYHAGCATTWLSINKACPICYMEVFADMSKRK 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g1462 267 ProSiteProfiles Zinc finger RING-type profile. 215 255 IPR001841 -
Lele31g1462 267 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 25 260 IPR033276 GO:0004842|GO:0016567|GO:0046621
Lele31g1462 267 SUPERFAMILY RING/U-box 211 262 - -
Lele31g1462 267 SMART ring_2 215 255 IPR001841 -
Lele31g1462 267 Pfam Ring finger domain 214 255 IPR001841 -
Lele31g1462 267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 260 IPR013083 -
Lele31g1462 267 FunFam E3 ubiquitin ligase BIG BROTHER 177 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g1462 Lele-ChrLele31 20029486 20033663 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g1462 28 264 C3H Transcription Factor Family AT3G63530 43.621 8.58e-67 206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0087 29 512678 519606 Lele31g1462 31 20029486 20033663 hybridization
Lele30g1309 30 15476274 15480224 Lele31g1462 31 20029486 20033663 hybridization