Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g1442 ATGGCGGAGGCAAACACTAGCAGTGGCAACAGGTGGTCTCTTCAGGGCATGACGGCTCTTGTAACCGGTGGAACCAAGGGAATTGGGTATGCTATTGTGGAGGAGTTGGCACAGTTAGGAGCTGTCGTGCACACTTGCTCTAGGAATGAATCTGAGCTTAATGAATGCTTACAACGATGGAATGCTAAGGGATTTCAAGTTACTGCTTCTGTTTGCGACATGGCGTCCTCTGCACAAAGACAAGATCTTATAACTAAAGTCTCCGGTGTGTTTCACGGCAAACTCAACATCCTTGTGAACAATGTGGGAACAAACATTAAAAAACCAGTCCTAGACTATACAGCAGAAGATTTCTCATTTCTAGTGAGTACAAATTTGGAATCAGCATACCATATAAGCCAACTTGCACACCCTCTTCTAAAAGCTTCAAAAGCTGCAAGCATTGTTTTCATATCTTCCATTGCTGCGGCGTCAGCTATAAATGGAACATCAATATATGCTGCAACGAAAGGAGCAATGAACCAGCTAACCAAGAACTTGGCATGGGAGTGGGGAAAAGACAATATAAGGACCAATTGCATTGCACCAGGCCCCATTAAGACACCCCTCCTTGCAGGATTTTTCAAAGATGAAAAGGCACTGCATGAGAAGTTCATCGAAAGAATACCTTTGCAACGGATAGGGGAGCCAAACGAGGTGTCTTCCATGGTGGCATTCCTCTGCTTACCGACTGCCTCATACATAACGGGACAGATCATTTGCATCGACGGAGGATTTACGGTGTTTGGTTTGTGA 795 0.4491 MAEANTSSGNRWSLQGMTALVTGGTKGIGYAIVEELAQLGAVVHTCSRNESELNECLQRWNAKGFQVTASVCDMASSAQRQDLITKVSGVFHGKLNILVNNVGTNIKKPVLDYTAEDFSFLVSTNLESAYHISQLAHPLLKASKAASIVFISSIAAASAINGTSIYAATKGAMNQLTKNLAWEWGKDNIRTNCIAPGPIKTPLLAGFFKDEKALHEKFIERIPLQRIGEPNEVSSMVAFLCLPTASYITGQIICIDGGFTVFGL 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g1442 264 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 166 185 IPR002347 -
Lele31g1442 264 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 93 104 IPR002347 -
Lele31g1442 264 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 154 IPR002347 -
Lele31g1442 264 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 15 262 IPR036291 -
Lele31g1442 264 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 153 181 IPR020904 GO:0016491
Lele31g1442 264 Gene3D - 1 263 - -
Lele31g1442 264 PANTHER TROPINONE REDUCTASE 10 261 IPR045000 GO:0016491
Lele31g1442 264 PRINTS Glucose/ribitol dehydrogenase family signature 166 185 IPR002347 -
Lele31g1442 264 PRINTS Glucose/ribitol dehydrogenase family signature 93 104 IPR002347 -
Lele31g1442 264 PRINTS Glucose/ribitol dehydrogenase family signature 140 156 IPR002347 -
Lele31g1442 264 PRINTS Glucose/ribitol dehydrogenase family signature 223 243 IPR002347 -
Lele31g1442 264 PRINTS Glucose/ribitol dehydrogenase family signature 187 204 IPR002347 -
Lele31g1442 264 PRINTS Glucose/ribitol dehydrogenase family signature 18 35 IPR002347 -
Lele31g1442 264 FunFam Short-chain dehydrogenase reductase 3 262 - -
Lele31g1442 264 Pfam Enoyl-(Acyl carrier protein) reductase 25 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g1442 Lele-ChrLele31 19913176 19914368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g1442 1 264 Miscellaneous Gene Families AT2G29150 61.278 4.48e-116 332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele31g1442 31 19913176 19914368 Lele09g1258 09 21375989 21380561 CCT
Lele31g1442 31 19913176 19914368 Lele10g1233 10 23396357 23398702 CCT
Lele31g1442 31 19913176 19914368 Lele11g1261 11 19557450 19560432 CCT
Lele31g1442 31 19913176 19914368 Lele12g0061 12 555882 558233 CCT
Lele30g1286 30 15357912 15359215 Lele31g1442 31 19913176 19914368 hybridization