Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g1441 ATGGTGACTTGTTGCCAGTTGACCATCTCTCTTGGCATCATCATCTCAAAAATGGAGTCTGAAGATAAGACAACATCATCAGAAACAAAGGCAAGCGATGAGCAAGGAGCGAGTCAAGTGACGAGGTCGTACGAGTGCAGCTTCTGTAAAAGGGGATTCTCTAATGCACAAGCATTGGGAGGCCACATGAACATTCACAGGAAAGACAAAGCCAAGATCAAGCAATCTTCTTCTAATTCAACCCATCGTCATCGTCATCTTCATCAGCCATCTTTGGATGTTCACAGTAAGGTCGAAGACAGAACCAGCTCAGCTTACTGGCCTAGCAGCAGGAATATGGAAGATTCGTCTTCCAGAGACGAAACCTGCGAAGAACTTGGCATAAGGCAGCTTCCTTTATTTGCAGAAACACCAAGTGGAGAAGAATTAGGTCGTGTTCATGATAGAAGAGGAATTGCTGAAGAAATGAAGGGTTCGCCTTCGGATTTAGACCTTGAACTCAGACTAGGGCCCGACCCACCCTCTCCCACTATTGGTACCCGAAAATTCTTTTGA 555 0.4559 MVTCCQLTISLGIIISKMESEDKTTSSETKASDEQGASQVTRSYECSFCKRGFSNAQALGGHMNIHRKDKAKIKQSSSNSTHRHRHLHQPSLDVHSKVEDRTSSAYWPSSRNMEDSSSRDETCEELGIRQLPLFAETPSGEELGRVHDRRGIAEEMKGSPSDLDLELRLGPDPPSPTIGTRKFF 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g1441 184 Pfam C2H2-type zinc finger 44 68 - -
Lele31g1441 184 ProSiteProfiles Zinc finger C2H2 type domain profile. 44 71 IPR013087 -
Lele31g1441 184 SUPERFAMILY beta-beta-alpha zinc fingers 42 71 IPR036236 -
Lele31g1441 184 MobiDBLite consensus disorder prediction 61 99 - -
Lele31g1441 184 ProSitePatterns Zinc finger C2H2 type domain signature. 46 66 IPR013087 -
Lele31g1441 184 PANTHER OS07G0101800 PROTEIN 19 173 - -
Lele31g1441 184 SMART c2h2final6 44 66 IPR013087 -
Lele31g1441 184 Gene3D Classic Zinc Finger 17 105 - -
Lele31g1441 184 MobiDBLite consensus disorder prediction 155 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g1441 Lele-ChrLele31 19908698 19909537 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g1441 41 180 C2H2 Transcription Factor Family AT3G53820 36.842 3.15e-17 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele31g1441 zf-C2H2_6 8.7e-06 CL0361