Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g1433 ATGGGGGAGGAGGTCAAGATGACCGATTACGACGGCGCTGCCCCCGATGATGATGAGAGAATCCTCGAATGGGAGCTGGGCCTCCCTACTGCCGATGATCTCACCCCCCTCTCTCAGCTCCTGATCCCGCCGGAGCTCGCCTCTGCCTTCAGCATCTCGCCGGAGCCCAGCCGGACTCTCTTCGACGTCAGTCGTGCTTCCCAGACTACTCTGACGAATCTTCGCGGCGGAAGCTCTCAGGCCTTTTCCTCCAATAATTTCAAGTCGCTCAACGATGACGGCTGTCGAGACCCCATCGTGGTGGAGCCCGATGACGAGGCCGATCGACATGGGTCGGGGTCCGATTCTCGGAAACTCAGAAAGATCGACTGCACCGAAGAAGCTGATTCGGCTCTGCGGACGGAGAATTCGACGGATGATCCGTCCGCTCGGACCTTAAAGCGGCCTCGGCTTGTATGGACCCCGCAGTTGCACAAGCGGTTTGTGGATGTGGTGGCTCACCTGGGAATCAAGAACGCAGTGCCGAAGACGATTATGCAATTGATGAACGTCGAAGGATTGACCCGAGAAAATGTCGCGAGCCATCTTCAGAAGTATCGGCTTTACTTGAAGAGGATGCAGGGTTTATCCAACGAGGGCCCTTCATGGTCGGACCAGCTCTTCGCTTCCACTCCGGTGCCGCAGAGCTTACACGAGTCTGGTGGAAGTGGGCACTCCCATGGAAATGGGCATCTTCCGGTCCCGATTCCGATGCTATATCCACCGCCAATGATGCGCATGCCGGTTATCGGAATGGCCAATGGTCAGGGTCACCCGCATGCTCACATGGGAATGCCGGTTGCCAATCACGGGTTCGACTCACATCCATATAACATGTTGCAGCAAAGGGATTGGTCTGGCAATAAATTTGCTTCGGTTGTATCAGACCCTCACGTTACTACTAATGATAAATGA 954 0.5556 MGEEVKMTDYDGAAPDDDERILEWELGLPTADDLTPLSQLLIPPELASAFSISPEPSRTLFDVSRASQTTLTNLRGGSSQAFSSNNFKSLNDDGCRDPIVVEPDDEADRHGSGSDSRKLRKIDCTEEADSALRTENSTDDPSARTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNEGPSWSDQLFASTPVPQSLHESGGSGHSHGNGHLPVPIPMLYPPPMMRMPVIGMANGQGHPHAHMGMPVANHGFDSHPYNMLQQRDWSGNKFASVVSDPHVTTNDK 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g1433 317 FunFam Two-component response regulator 144 207 - -
Lele31g1433 317 Pfam Myb-like DNA-binding domain 152 200 IPR001005 -
Lele31g1433 317 SUPERFAMILY Homeodomain-like 145 205 IPR009057 -
Lele31g1433 317 Gene3D - 145 207 - -
Lele31g1433 317 MobiDBLite consensus disorder prediction 219 243 - -
Lele31g1433 317 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 149 201 IPR006447 GO:0003677
Lele31g1433 317 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 12 279 IPR044841 GO:0003700|GO:0006355
Lele31g1433 317 MobiDBLite consensus disorder prediction 95 122 - -
Lele31g1433 317 MobiDBLite consensus disorder prediction 219 236 - -
Lele31g1433 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 153 204 IPR017930 -
Lele31g1433 317 MobiDBLite consensus disorder prediction 93 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g1433 Lele-ChrLele31 19881732 19882685 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g1433 1 291 G2-like Transcription Factor Family AT3G46640 55.592 1.25e-90 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele31g1433 Myb_DNA-binding 1.3e-08 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0119 29 684154 685107 Lele31g1433 31 19881732 19882685 hybridization
Lele30g1280 30 15327691 15328632 Lele31g1433 31 19881732 19882685 hybridization