Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g1393 ATGTCTGCAGCTCTGGATATGACCCTTGATGACATCATCAAGAAAAACAAGAAATCTGGATCTGGTAACACCAGAGGTCGGGGCCGAGGATCTGGTCCCGGTCCTGCTCGCCGCTTCCCGAATCGTGCCGCCAATCGTGTAGCACCTTATACAACTGCAAAGGCACCGGAGGCGACATGGCAGCATGATATGTTTGCGGATCAGCCGATGGCACCGCACGCAGCTCAAGGTAGTCGAGCGTCTGCCATAGAAACGGGCACTAAGCTCTACATATCTAATTTGGATTACGGTGTTTCTAACGAGGATATTAAGGAGTTGTTTTCTGAAGTTGGTGACCTAAAACGGTATGCTATCCATTACGACAGGAGTGGCAGATCAAAGGGTACAGCAGAAGTAGTCTTTTCACGACGAGTTGATGCTGTAGCTGCTGTGAAGAGATACAACAATGTTCAGCTTGATGGTAAACCAATGAAGATAGAGATTGTGGGGACAAACATTGCTACCCCTGCTGCGGCTCCTGCTGCAAATGGAGCTGTTGGAAATTCAAACGGTGTTCCTAGAATTTTACAAGGTAGAGGTGGGGCTTTTGGAAGGCCACGTGGTGGAGGTAGAGGACGTGGCTTTCAGAGGGGTCGAGGACGTGGAAGAGGTCGTGGAGAGAAGGTGTCTGCAGAAGATCTTGATGCTGAATTGGAGAAGTATCATTCAGAGGCAATGGAAATTAACTGA 729 0.4897 MSAALDMTLDDIIKKNKKSGSGNTRGRGRGSGPGPARRFPNRAANRVAPYTTAKAPEATWQHDMFADQPMAPHAAQGSRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYAIHYDRSGRSKGTAEVVFSRRVDAVAAVKRYNNVQLDGKPMKIEIVGTNIATPAAAPAANGAVGNSNGVPRILQGRGGAFGRPRGGGRGRGFQRGRGRGRGRGEKVSAEDLDAELEKYHSEAMEIN 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g1393 242 Coils Coil 224 242 - -
Lele31g1393 242 FunFam THO complex subunit 4 80 224 - -
Lele31g1393 242 SMART FoP_duplication_2 175 242 IPR025715 -
Lele31g1393 242 MobiDBLite consensus disorder prediction 192 228 - -
Lele31g1393 242 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 240 - -
Lele31g1393 242 Gene3D - 66 225 IPR012677 -
Lele31g1393 242 MobiDBLite consensus disorder prediction 213 228 - -
Lele31g1393 242 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 164 IPR000504 GO:0003723
Lele31g1393 242 CDD RRM_THOC4 87 161 - -
Lele31g1393 242 SUPERFAMILY RNA-binding domain, RBD 61 167 IPR035979 GO:0003676
Lele31g1393 242 SMART rrm1_1 88 160 IPR000504 GO:0003723
Lele31g1393 242 Pfam C-terminal duplication domain of Friend of PRMT1 190 236 IPR025715 -
Lele31g1393 242 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 157 IPR000504 GO:0003723
Lele31g1393 242 MobiDBLite consensus disorder prediction 13 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g1393 Lele-ChrLele31 19678266 19680214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g1393 86 161 Eukaryotic Initiation Factors Gene Family AT2G23350 35.526 3.95e-09 54.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0160 29 883406 885278 Lele31g1393 31 19678266 19680214 hybridization
Lele30g1250 30 15127309 15129229 Lele31g1393 31 19678266 19680214 hybridization