Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g1381 ATGAATATTATGTGGCAGCTTGCATCGCTCTTCCTTGACAATTCCGACTGCAAGAAATGGCCTGTCGAAAAAAGATTGTGGAGAATTGGGGTTTGTGAAGTTGGAGTGGGAAACTCATATGGTGAAAGCAGCATGAAGAAGAACGAGAATGGGTCAGTGTTAGGTTCGATGGACGAGTCAGCTTCTGCAACATTTGGAACATTAGACGCAGAAATCACACCAGAAACTGCCGATTTCTTTGTGAGTATTGCAGAAGGGGATCCAGATTGCCCCTCCAAAGGTTACTCTTCGATTGAGCAGGCCCTTAATGCATTACGCCAAGGAAAGTTTGTGATTGTGGTAGATGAGGAAAATGGCGAATTTGAAGGGAATCTTGTAATGGCGGCATCGATGACTAGTCCAGAGCATGTTGCCTTTATGATAAAGCACGGATCAGGGATTGTTTCCGTGGGACTGAAGGATGAGGATCTTCAAAGACTGAAGCTTCCTCTCATGTCACCTGATTCTGAAACTGAGGATTCTTGTGCACCAACTTTTACTATCACTGTGGACTCAAAACCAGAAGATTTCAGAAAGCCAGGTCATGTTTTTCCCCTCAAATACAGAAACGGTGGTGTTCTCAGAAGAGCAGCTCACACTGAAGCTTCTGTAGATTTGGTCTCCATGGCTGGCTTGAGGCCCGTCTCTCTTCTTTCAGCTCTTGTTGATGAAACTAATGGTTCTATGGCTCCCTTACCTCTTCTCAAAAACTTGGCATTACAACACAACATACCAATTGTTTCAATAACTGATTTGATAAGGTACCGGAGAAAGCGAGAAAAAATGGTTGAAAGAACTAGCTGCTCGCGCCTCCCTACTAAATGGGGCCTATTTCAAGCATATTGCTATCACTCTAAATTGGATGGAATTGAACATGTGGCCATTGTGAAGGATCAAGGTCGTGACACTGTTCAAGCCAACTTAGATCTTGGCTTAGCTGTTGATGCTCGCGAGTACGGCATTGGTGCCCAGATTCTGAGGGATTTAGGAGTTCGAACAATGAGGTTAATGAGAAATAACTCAGCAAAGTTAGTTGGACTGAGAGGGTATGGTTTGGCAGTGATAGGGCGTGTTCCAGTGCTGACGCCAATTACGGAAGAAAACAAGAGGTACCTGAAACAGAACGGACCAAAATGGGTCATGTGATTCTTTTTTCCCTGGTTGATGCCATTCTTATTCTTTGTATGGTTGATGCGTCAAATGCTATTGGAGGTTATTTTTCTCTATTACATTTCTGCTCTAGAATTTTCATTTCTTAAAAAATTAATTGGTGCTGCAGTTCTTACTTTGCGAAAGGCTAGGAATCCCAAATACCCACGTATTAGTGCTACACCAAGAAATAAACTCGATCATCATCAAATTTTGGAGTACCCTCTCACTACTGAGTCTGCAATGAAGAAGATTGAAGACAACAACACTTTGGTTTTCATTGTTGACCTATGTGCTGACAAGAAGAAGATAAAGGATGCGGTGAAGAAAATGTATGACATTCAGGCCAAGAAAGTAAATACCTTGATCAGGTATAATGTTAGGATTTTTCTTCTCTTGCTTAACTGTGGCAAAAAATATTGCATATCTGGAAAACTGGTTTGA 1632 0.4203 MNIMWQLASLFLDNSDCKKWPVEKRLWRIGVCEVGVGNSYGESSMKKNENGSVLGSMDESASATFGTLDAEITPETADFFVSIAEGDPDCPSKGYSSIEQALNALRQGKFVIVVDEENGEFEGNLVMAASMTSPEHVAFMIKHGSGIVSVGLKDEDLQRLKLPLMSPDSETEDSCAPTFTITVDSKPEDFRKPGHVFPLKYRNGGVLRRAAHTEASVDLVSMAGLRPVSLLSALVDETNGSMAPLPLLKNLALQHNIPIVSITDLIRYRRKREKMVERTSCSRLPTKWGLFQAYCYHSKLDGIEHVAIVKDQGRDTVQANLDLGLAVDAREYGIGAQILRDLGVRTMRLMRNNSAKLVGLRGYGLAVIGRVPVLTPITEENKRYLKQNGPKWVMXFFFPWLMPFLFFVWLMRQMLLEVIFLYYISALEFSFLKKLIGAAVLTLRKARNPKYPRISATPRNKLDHHQILEYPLTTESAMKKIEDNNTLVFIVDLCADKKKIKDAVKKMYDIQAKKVNTLIRYNVRIFLLLLNCGKKYCISGKLV 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g1381 543 Pfam Ribosomal protein L23 467 520 IPR013025 GO:0003735|GO:0005840|GO:0006412
Lele31g1381 543 Pfam 3,4-dihydroxy-2-butanone 4-phosphate synthase 99 185 IPR000422 GO:0008686|GO:0009231
Lele31g1381 543 Pfam 3,4-dihydroxy-2-butanone 4-phosphate synthase 185 268 IPR000422 GO:0008686|GO:0009231
Lele31g1381 543 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 465 522 IPR012678 GO:0003735|GO:0005840|GO:0006412
Lele31g1381 543 SUPERFAMILY YrdC/RibB 96 276 IPR017945 -
Lele31g1381 543 Gene3D DHBP synthase 89 185 - -
Lele31g1381 543 SUPERFAMILY RibA-like 274 374 IPR036144 -
Lele31g1381 543 Pfam GTP cyclohydrolase II 310 372 IPR032677 -
Lele31g1381 543 Gene3D GTP cyclohydrolase II 309 375 IPR036144 -
Lele31g1381 543 PANTHER GTP CYCLOHYDROLASE II-RELATED 94 311 - -
Lele31g1381 543 Gene3D DHBP synthase 186 277 - -
Lele31g1381 543 Gene3D - 438 540 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g1381 Lele-ChrLele31 19619104 19622918 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g1381 442 520 Cytoplasmic Ribosomal Protein Gene Family AT3G55280 87.342 7.25e-33 121