Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g1372 ATGTCGGGTTTACTTAATTCTTCTCTGAATGGATCTGCTTCAAATCTTCCAGACAGTGCTGGTAGGTCATTTGCCACATCATTCTCTGGCCAGTCTGGTGCTGCCTCCCCAGTTTTCCATCATAGTGGGGCTATGCAGGGATTGCATAACATCCACGGCAGCTTTAATGTTCCCAACATGCCGGGTACACTTGCATCAAGAAATTCAACAATAAATAGCATCCCGTCTGGAGGGGTTCAACAGCCTACTGGAGGCCTTTCTAGTGGAAGATTTGCATCAAATAATCTTCCTGTTGCTTTGTCTCAGCTAACTCATGGAGGCTCTCATGGACATTCAGGAGTAACAAACAGAGGAGGGTTGGGGGTATCCCCAATTTTGGGAAATGCAGGTTCTCGAATTACAAGTTCTATGGGGAACATGGTTGGTGGAGGGAACATTGGGAGGAGCATTGGCTCTGCTGGAGGATTGTCTGTGCCTGCTCTTGCTTCTCGTCTAACTTTAAGTGCAAACAGTGGATCTGGTGGTTTAAGTATGCAAGGACAGAATCGGTTGCTGAGTGGCATTCTTCCACAAGGATCACCCCAAGTTATTTCAATGCTTGGAAATTCTTATCCTAGTGCTGGAGGGCCCCTTGGCCAAAGCCATGTTCAAGCAGTAAATAATTTGAACTCAATGGGGATGTTGAGTGATATGAACTCGAATGACATCTCCCCTTTTGACATCAATGACTTCCCTCAATTGACAAGTCGACCCAATTCTGCTGGAGGGCCCCAAGGACAGTTGGGTTCTTTGCGAAAACAGGGTCTTGGAGTTAGTCCCATTGTCCAACAAAATCAAGAGTTTAGCATTCAAAATGAAGATTTCCCAGCTTTACCAGGATTCAAAGGTGGCAATGCAGATTATGCTATGGATATGCACCAGAAAGAACAACTTCATGAGAATGTTGTGTCCATGATGCAATCTCAGCATTTTCCTATGGGAAGGTCTTCTGGTTTCAGCTTAGGGGGGGCATATTCGTCACATCGATCACAGCAACAGCATGCACCATCTGTCAGTAGTGTTGGTGTCTCCTTTTCATCTGCAAACAATCAGGAACTTCTCCACCTACATGGGTCAGATATATTTCCAGCATCGCATTCAACCTACAATTCCCAGACTAGTGGAGCTTCTGGCATTGGATTAAGGCCTCTTAATTCTCCAAATACTGTTTCTGGTATGGGATCATATGACCAGCTTATTCAGCAATACCAACAGCACCAGAACCAGAACCAGTCCCAGTCACAGTTTCGCCTTCAACAAATGTCAACTGCAAATCAGTCTTTTAGGGATCAAGGCTTGAAATCCATGCAAACTTCCCAAGCGACACCAGATCCATTTGGTTTGCTTGGCTTGTTAAGTGTGATCAGGATGAGTGATCCTGATTTGACATCTCTTGCACTTGGAATTGATCTTACTACACTTGGGTTGAATTTAAATTCATCAGAAAATCTTCACAAGACTTTTGGATCTCCATGGTCTGATGAACCGGCTAAGGGTGATCCAGAGTTCACTGTGCCACAATGTTATTATGCTAAACAGCCACCTGCCCTGAGTCATGGCTACTTTTCAAAGTTTACAGCGGAAACATTGTTTTACATATTTTACAGTATGCCCAAGGATGAAGCTCAATTATACGCTGAAAATGAGCTTTACGATAGAGGCTGGTTGTATCACAAAGAACAGCATGTTTGGTTTATAAGAGTTCCTAACATGGAGCCACTTGTCAAAACAAACACGTATGAGAGGGGATCTTACCACTGCTTTGATCCGAACACATTTGAAACAATTCGTAAGGATAACTTTGTCGTTTATTATGAGTTGTTGGAAAAACCCACCCCTGCCTCATCATTGAGGGGGGAAGGGAAACTTGTGATGTAA 1917 0.4392 MSGLLNSSLNGSASNLPDSAGRSFATSFSGQSGAASPVFHHSGAMQGLHNIHGSFNVPNMPGTLASRNSTINSIPSGGVQQPTGGLSSGRFASNNLPVALSQLTHGGSHGHSGVTNRGGLGVSPILGNAGSRITSSMGNMVGGGNIGRSIGSAGGLSVPALASRLTLSANSGSGGLSMQGQNRLLSGILPQGSPQVISMLGNSYPSAGGPLGQSHVQAVNNLNSMGMLSDMNSNDISPFDINDFPQLTSRPNSAGGPQGQLGSLRKQGLGVSPIVQQNQEFSIQNEDFPALPGFKGGNADYAMDMHQKEQLHENVVSMMQSQHFPMGRSSGFSLGGAYSSHRSQQQHAPSVSSVGVSFSSANNQELLHLHGSDIFPASHSTYNSQTSGASGIGLRPLNSPNTVSGMGSYDQLIQQYQQHQNQNQSQSQFRLQQMSTANQSFRDQGLKSMQTSQATPDPFGLLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSSENLHKTFGSPWSDEPAKGDPEFTVPQCYYAKQPPALSHGYFSKFTAETLFYIFYSMPKDEAQLYAENELYDRGWLYHKEQHVWFIRVPNMEPLVKTNTYERGSYHCFDPNTFETIRKDNFVVYYELLEKPTPASSLRGEGKLVM 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g1372 638 MobiDBLite consensus disorder prediction 102 121 - -
Lele31g1372 638 PANTHER CCR4 NOT-RELATED 42 623 IPR040168 GO:0030015
Lele31g1372 638 MobiDBLite consensus disorder prediction 59 90 - -
Lele31g1372 638 Pfam NOT2 / NOT3 / NOT5 family 499 621 IPR007282 GO:0006355
Lele31g1372 638 FunFam probable NOT transcription complex subunit VIP2 isoform X1 449 630 - -
Lele31g1372 638 Gene3D - 448 632 IPR038635 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g1372 Lele-ChrLele31 19554612 19558379 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g1220 11 19309342 19310226 Lele31g1372 31 19554612 19558379 CCT
Lele12g0100 12 840542 841029 Lele31g1372 31 19554612 19558379 CCT
Lele09g1222 09 21113395 21116350 Lele31g1372 31 19554612 19558379 CCT
Lele10g1197 10 23131388 23134648 Lele31g1372 31 19554612 19558379 CCT
Lele29g0181 29 1018552 1022318 Lele31g1372 31 19554612 19558379 hybridization
Lele30g1226 30 14990167 14993869 Lele31g1372 31 19554612 19558379 hybridization