Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g1369 ATGAGCAGAGCATGCCGTTATAGCCCGGAGGAGAAGAAGGTGAGGATTGAGAGATATAGAAGCAAGCGAAATCTGAGAAACTTCAACAAGAAAATCAAGTATGCTTGCAGGAAGACATTAGCAGACAGCAGGCCACGCATCAGAGGAAAATTTGCGAGGAACGAAGAAACTGATAAGAGCCCTGCAGTTCATTGGGTTGATTTCTTTGATAATTTAGTTGCTGCAGATAATATTGTTCAAGAGCCTCAAGATACTACTTTCTTTGGTCTCATGTTTTAG 279 0.4158 MSRACRYSPEEKKVRIERYRSKRNLRNFNKKIKYACRKTLADSRPRIRGKFARNEETDKSPAVHWVDFFDNLVAADNIVQEPQDTTFFGLMF 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g1369 92 ProSiteProfiles CCT domain profile. 12 54 IPR010402 GO:0005515
Lele31g1369 92 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 4 58 IPR045281 GO:0009909
Lele31g1369 92 Pfam CCT motif 14 54 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g1369 Lele-ChrLele31 19537276 19538382 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g1369 8 59 C2C2-CO-like Transcription Factor Family AT5G15850 46.154 1.91e-11 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele31g1369 CCT 1e-17 CL0281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0183 29 1039052 1041126 Lele31g1369 31 19537276 19538382 hybridization
Lele30g1222 30 14966614 14968827 Lele31g1369 31 19537276 19538382 hybridization