Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g1356 ATGAGTGACGAAGGAGAAAGGACTTGTCCTCTTTGTGCAGAAGAGATGGATTTGACTGATCAGCAGTTGAAGCCATGCAAATGTGGTTATGAGATATGTGTTTGGTGCTGGCATCACATAATGGACATGGCTGAGAAGGATGACACAGAGGGGAGATGCCCTGCATGTCGAACTCCATATGACAAGGAGAAGATTGTAGGGATGGCTGCAAACTGTGAGAGATTGGTGGCAGAAATTAATACTGAAAGGAAGACGAAAAGCCAGAAAGCAAAGTCTAAGTCTTCTGAAGGCCGGAAGCAGCTGAGCAGTGTGCGAGTTATTCAGCGTAATCTTGTCTATATAGTTGGATTGCCGCTTAATCTGGCAGATGAAGAAATTCTTCAGCAGCGAGAGTATTTCGGTCAGTATGGGAAAGTCTTGAAAGTGTCAATGTCTCGGACAGCAGCTGGTGTCGTTCAACAGTTTCCAAACAATACATGTAGTGTATATATTACTTACTCAAAGGAAGATGAAGCAATTCGTTGTATCCAAAGTGTACATGGATTTGTCTTGGAGGGTAGACCTTTAAGGGCTTGTTTTGGAACCACAAAGTATTGTCATGCATGGCTCCGAAACATGCCTTGCAGCAATCCCGATTGTTTATATCTGCATGATATTGGCTCTCAAGAAGATAGTTTCACAAAAGATGAAATAATTTCAGCATACACTAGAGTTCAACAAATTACGGGTGCCACAAATAATATGCAACGGCGGTCAGGGAATGTGTTGCCACCCCCAGTTGATGATTACATGAGCCATTCTGCTGAAAAACCCATTGTGAAAAATGGCACGAATAATTCAACTAGCACTGCAAGAGGTTCACCTCCAAATGGAAGTTCTGGAAGATCTATAGCTCTAAATCCTGCTGCAGTGTGGGGTACAAGAGCTACAAATTGTCAGCCCCCTACTGGAGGTTTATTATGTCCAGATGGACCACCCAAGCCAAAAGCTGATGCTGTCAGTGGCACACTAGCCTTTTCTTCAGCTGTTGCAGGTTCAAGCCAGAACTCGTCATTGCACAGTGATGCAACTAAGAGGCCACCATCAAGTGACGGGAGTTATAATGACCAAGTACAAAATGATTCATTAAAACCTGTAAAGCAATTCAATAGCATGGACAATCCGAGTAATGCAGGTGAAAAGACTGCTACATCTGCTGATGGTTCTCTTGCACCTGTGAATTCAAACAGCCTGTCTTCCTTACCATTATACAGAGATGGTGATAGAGGCAGTTGTACTACATCAAACACAACAAATTCTACTGACACCGCTGGGCAGTCATGCAGCTCTGGTCCTGAGGAAGCAACTATTGCTACCAATGAAGAGATTCAGAACTTGTGCTCCAATCTGTCCTCTGTTAACATTGATAGAAATGGCCAAAATGAATACTATGGGGTGGTCAGATCTAATTGCCCCCCTTCTGATTATGTGTTGACAAAGTCTCCTCAACTTAAAGCATCGCAGCAGCATAAAGATGACAAATTTAGAGATATACATGTTTCAGTCGAATCTGGTAAAGCTGCTCCATCTGATTGGGAGCAATCTGATTGGAAATTGAATTCACAAGCCCAAATGGTATCAGCTACAACTGACTTGGAAGATGATATAGCTTCTTTTGATAATCAAAGGCTCAAAGATCCAGAAGTTTTTAGTCATTCTCATTACATGCCTAAGTCAACAAGTTTTGTTCTTGTCCCAATCCATTCTAACCATAGTCTCGTCCAACATGGGGAACAGCCTCCTGCTGTGAATGTTGATTTTGTATCTGCAGATTCTAAGGTTGGGGATGTTTCTCTGTTATATCCATCCAGCATATTATGTAATGGTTATCCTGATAAATTGGTCGGCGGCTGCTCTTCTGGTTTGAATAGCGCCACTGATTGTACATCACTTCAGGATGTAAGAAATGAACAATGCATTGGAAGATTATTCGCGGAATCAGTTAGTGCTGGAAGTGATGCTGCATCGGATAAGGGTGAGAGTAGTATAATTTCAAATATATTGTCCATGGACTTTGATGCATGGGATGACTCACTGACATCACCACAGAATTTGGTTAAGTTGCTTGGTGACAACACTGATAACCAGTTTGTTGCCTTAAAAAAATCAAGTTCTTTGAAAGTGCAGAATAATAGTCAATCAAGATTCTCTTTTGCAAGACAGGATGAACCTAGAATGCAAGCATTTAATGCAAACCCATCTTATGGTATTAGTGAGCAATTTCCAGGGAGGGGCTCTTTCATACAGGATTTTTCTGAAAGAGACTTGTATAATGATAGGAAGTTGGGTATGGCAAATGGCTTTACTTTCTGTAAAGTTGGGGAATCTGAAAATCTAGGCAGTGGTCACTTTGTTCCTTCTAGTAAGCATTCCGCTGTTTCTAGAGCTCAAATTTCTGCTCCTCCAGGATTTTCAGTTCCAAGTAGGCCTCCACCACCAGGTTTTTCTTCTTATGAGAGAGTGGAACTGGCTTTCAGCTCAGTATCCGGGAATTCATTGCCTGACCCATCCTTGTTGAGAAATTCATATCAGACACCCACAGCTGGAAATATTGGTGGTACAGGGGACATTGAATTAGTAGATCCTGCTATTTTGGCTGTTGGCACGGGCAGACTTCAAGGTTCACTAAACGGCCCGGGGTTGGACGTCAGATCTAGTTTCTCCCCACAATTAAATTACTTTGAAAATGAGGCCAGACTTCAATTATTGATGCAAAGATCTCTCTCACAGCCACACAACAGATTTTCTGAAATTGGGGGTACTTTTTCTCAGATTGGTGATTCTTATGGCATTTCTTCAAGGTTAGACCAATCACAAGTCAGCAATTTGACCCCTTTTGCTCAGTTGTCCTTACAGCAGTCTAGAAATGCTCTTTTGTCTGATGGCCAATGGGATGGGTGGAATGAGGTGCAGAGTGGAAGTAGTCTGGGGGTGGCTGAGCTACTAAGAAATGAAAGACTTGGAATTAGCAAGTTATATGCAGGATATGATGATTCAAAATATCGGATGCCAAATTCTGGGGATCTTTACAACCGAACCTATGGGATATGA 3090 0.4214 MSDEGERTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKDDTEGRCPACRTPYDKEKIVGMAANCERLVAEINTERKTKSQKAKSKSSEGRKQLSSVRVIQRNLVYIVGLPLNLADEEILQQREYFGQYGKVLKVSMSRTAAGVVQQFPNNTCSVYITYSKEDEAIRCIQSVHGFVLEGRPLRACFGTTKYCHAWLRNMPCSNPDCLYLHDIGSQEDSFTKDEIISAYTRVQQITGATNNMQRRSGNVLPPPVDDYMSHSAEKPIVKNGTNNSTSTARGSPPNGSSGRSIALNPAAVWGTRATNCQPPTGGLLCPDGPPKPKADAVSGTLAFSSAVAGSSQNSSLHSDATKRPPSSDGSYNDQVQNDSLKPVKQFNSMDNPSNAGEKTATSADGSLAPVNSNSLSSLPLYRDGDRGSCTTSNTTNSTDTAGQSCSSGPEEATIATNEEIQNLCSNLSSVNIDRNGQNEYYGVVRSNCPPSDYVLTKSPQLKASQQHKDDKFRDIHVSVESGKAAPSDWEQSDWKLNSQAQMVSATTDLEDDIASFDNQRLKDPEVFSHSHYMPKSTSFVLVPIHSNHSLVQHGEQPPAVNVDFVSADSKVGDVSLLYPSSILCNGYPDKLVGGCSSGLNSATDCTSLQDVRNEQCIGRLFAESVSAGSDAASDKGESSIISNILSMDFDAWDDSLTSPQNLVKLLGDNTDNQFVALKKSSSLKVQNNSQSRFSFARQDEPRMQAFNANPSYGISEQFPGRGSFIQDFSERDLYNDRKLGMANGFTFCKVGESENLGSGHFVPSSKHSAVSRAQISAPPGFSVPSRPPPPGFSSYERVELAFSSVSGNSLPDPSLLRNSYQTPTAGNIGGTGDIELVDPAILAVGTGRLQGSLNGPGLDVRSSFSPQLNYFENEARLQLLMQRSLSQPHNRFSEIGGTFSQIGDSYGISSRLDQSQVSNLTPFAQLSLQQSRNALLSDGQWDGWNEVQSGSSLGVAELLRNERLGISKLYAGYDDSKYRMPNSGDLYNRTYGI 1029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g1356 1029 SMART rrm2_1 111 192 IPR003954 GO:0003676
Lele31g1356 1029 FunFam RNA binding (RRM/RBD/RNP motifs) family protein 1 77 - -
Lele31g1356 1029 CDD RRM_CNOT4 105 204 IPR034261 -
Lele31g1356 1029 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 196 IPR000504 GO:0003723
Lele31g1356 1029 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 190 IPR000504 GO:0003723
Lele31g1356 1029 Gene3D - 111 192 IPR012677 -
Lele31g1356 1029 SUPERFAMILY RING/U-box 3 66 - -
Lele31g1356 1029 CDD mRING-HC-C4C4_CNOT4 9 58 IPR039515 -
Lele31g1356 1029 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 1 1023 IPR039780 GO:0004842|GO:0030014
Lele31g1356 1029 MobiDBLite consensus disorder prediction 344 415 - -
Lele31g1356 1029 MobiDBLite consensus disorder prediction 344 447 - -
Lele31g1356 1029 MobiDBLite consensus disorder prediction 271 297 - -
Lele31g1356 1029 Pfam RING/Ubox like zinc-binding domain 9 61 - -
Lele31g1356 1029 MobiDBLite consensus disorder prediction 422 447 - -
Lele31g1356 1029 FunFam RNA binding (RRM/RBD/RNP motifs) family protein 111 192 - -
Lele31g1356 1029 ProSiteProfiles Zinc finger RING-type profile. 9 57 IPR001841 -
Lele31g1356 1029 SUPERFAMILY RNA-binding domain, RBD 104 190 IPR035979 GO:0003676
Lele31g1356 1029 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 77 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g1356 Lele-ChrLele31 19435391 19441336 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g1206 09 21005612 21020279 Lele31g1356 31 19435391 19441336 CCT
Lele29g0196 29 1133171 1143880 Lele31g1356 31 19435391 19441336 hybridization
Lele30g1209 30 14837965 14849850 Lele31g1356 31 19435391 19441336 hybridization