Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g1346 ATGAAAAAGTTAGAAACACTTTTGCAAGTCTCACCGAAGAAGGCAGAGGTGGGCCGACAGGGCATACAAGAAATCCCTCTAGGTAATGAATGGAAGAAGCCATTTGCTAGATCCTCTCATGCTAAAGGCATTGTTCTTGAAAAAATTGGAATTGAGGCTAAGCAGCCAAACTCTGCCATTAGAAAGTGTGCTCGAGTGCAGTTGATCAAGAATGGGAAGAAGATTGCAGTCTTTGTGCCCAATGATGGTTGCTTGAACTATATTGAAGAAAATGACGAGGTGCTGATTGCTGGATTTGGTCGAAAAGGGCATGCTGTTGGAGATATCCCTGGAGTTCGATTCAAGGTTGTGAAGGTATCAGGAGTGTCCCTTTCGGCTCTCTTCAAAGAGAAAAAGGAGAAGCCCAGGTCTTGA 414 0.442 MKKLETLLQVSPKKAEVGRQGIQEIPLGNEWKKPFARSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAVFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLSALFKEKKEKPRS 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g1346 137 CDD Ribosomal_S23 27 134 IPR005680 GO:0003735|GO:0006412|GO:0015935
Lele31g1346 137 ProSitePatterns Ribosomal protein S12 signature. 54 61 IPR006032 GO:0003735|GO:0005840|GO:0006412
Lele31g1346 137 Gene3D - 22 137 IPR012340 -
Lele31g1346 137 TIGRFAM uS12_E_A: ribosomal protein uS12 33 136 IPR005680 GO:0003735|GO:0006412|GO:0015935
Lele31g1346 137 Pfam Ribosomal protein S12/S23 31 136 IPR006032 GO:0003735|GO:0005840|GO:0006412
Lele31g1346 137 FunFam 40S ribosomal protein S23 21 137 - -
Lele31g1346 137 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 26 137 IPR006032 GO:0003735|GO:0005840|GO:0006412
Lele31g1346 137 SUPERFAMILY Nucleic acid-binding proteins 32 135 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g1346 Lele-ChrLele31 19381959 19382958 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g1346 27 137 Cytoplasmic Ribosomal Protein Gene Family AT5G02960 97.297 1.25e-74 217