Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g1319 ATGGCGGAAACTGGAAATACTGAACTTTCACTTTCAACCTCTAAAACCCTAAACCCTTCTGATCCAATCAATAGTTCTCATTCGTCCCAAGTGCCCGCTGAAAACGCTCAAATCCATCAGGTATCTTCGTCTACCGCCGCTCAGCCTTCCGATGATGTCGTATCGGGCGAGAAGCGGAAGCGCGAGGTCTCAGACTCAGGGGTCTCGGATACTTCCCTCAATCCCTTGTGGAAAACCAGCCTCTGTTCTTATTTCCGGCGACAAGATAGCTCCTGCAGCCACGGCAGTGAGTGCTGCTATGCCCACGGCGAAGAGGAGCTTCGGCCTCGCCCCGATAACACCTGGGACCCAACGTCTGAGCGGGCGAAGAAGGCAATGAAATCCGATACGGGCGAGAAATGTACAGTTTCCTTTTGGGTAATGATGACTGAGGCTGTGGTCGATGATGCTGATGGCGAGGACAATGATGATTCCAATCACGCTCTTAGCAAATGCTTGGTGCATTTGCCCAGCAAGTGGGGTTCGGACACCTTGAGGCGATTTCTCAATCAAGAGGGTATACCTTTTAAATCTGCAAAGAAAAAGAAAGGAATGCTGGTTGGATTTGTCACTTTTGAAGATCAAGAACAGTTGAAGAGCTCAACAAAGGAGCTGGAAGGCAAATTAATTGGCAGCAAAAGTTTAAAAGTTGTAGATGTCATTCCTCGATCATTTGAAAAGAAAAGTAACTCAAATGTTACTCTTTGTGCAGCATCTGCACAAAATGCAGATGCTGCATTAGCTAAAGAGAATACAGATGGGAATGTGGATAGTGAGACAAATGGTGCAAATTTGGCGGTTGGTGATTCCAAGCCAAAGAGAAGAAGCCTCTGCGACGTAGTTACTCCTCTTGCTCATATGGCCTATGGTGATCAGCTAGAGCACAAAAAAGGCTTTCTCACTCAGATTCTCAAAAGACTTACTAGAAATGCTCGTAAAGCTTGTCCCAGTGGTGTTTCTCTTCCTGAGTGGATTCTCAAGTCTAGGGACATAGGTGGTCTTCCTTGCAAACTAGAAGGTATTATTGGATCACCAAGGGTAAACGGATATCGCAACAAGTGTGAATTTTCTGTTGGATATTCTGTAGAAGGAAAAATAACAGTAGGATTCATGCTTGGAAATTTCAGGGAGGGTGTAACAGCAGTTGAGGAAGCTGTGGACTGCCTCAATACTTCAACAATTGCTCTCCAATATGCTTCTATCTTTCAGGAATTTCTGCAGCATTCACAGTTACCAATTTGGAACAGATTTAAGAATAGCGGGTTTTGGCGTCAGTTGACAGTTCGAGAGGGAAGGACAAATGAGAAGGTTGCTGATGCTGAAGATTCTGGTTGTATTGCAGAGGTTATGCTTATGGTGCAGGTTTCTACAATGGGCTTTGATAATGAGCAAGTAACTGGTGAATTTGACAAACTCGCTCAAGCATTTCTTGCCGGAGCTAATGCATGTTCTCCATCATTGCCTCTGTCGGCTCTGGTTGTACAGGATCACCAAGGAATATCCAATGTAGCACCAGCCGATGCCCCCCTGCGATCACTTCTCACGCCTAAAGCAGTTGGTGATCAAATAAATGAAAAAGATGGTACCATGGATGTGAGGATCCATGATTATATCAGCAATCTCAAGTTTTCTATATCTCCGACTGCATTTTTCCAGGTCAACACTCTAGCTGCTGAGAAGTTGTACTCACTTGCTGGAGATTGGGCATGCTTAGGTCCTGATACATTGCTATTTGATATTTGCTGTGGCACAGGAACAATTGGCCTGACCTTAGCACATCGTGTTGGTATGGTGATTGGCGTTGAAATGAATGCTTCTGCTGTATCTGATGCTCAAAGGAACGCTGAGATTAACGGCATAAAGAATTGTAGATTTATATGTGCAAAGGCAGAGGATGTGATGGGATCTTTGTTAAAGGAGTACCTAAATAAGCCTAAGGAACAAGTTGACGTTCCTAGCATCTGTGGAACTGATGATGAGGAAATTCCTGAGGGGAGTATATGCCATGAAGCTGAAAATGGTGAACAAGAATCTCAGTGTTCTGAAAATGGCAGGCAAGAAGGTGAAATTGAGGTTCAGAGAGGGAGCGATTCTGAAAACGGGAATTCTTTGATGCAACAATTTAAACATGTTGTTGCTATTGTTGACCCTCCACGTGCTGGACTGCATCCAACTGTGATCAAAGCTCTGAGGACTAATCAAGGACTGCGGAGGCTTGTCTACATATCCTGTAATCCTGAAAGTTTGGTAGCAAATGCCATTGAGCTTTGCGCACCATCTCCTGTGAAAATGGAAAAAGGAAATAAAAACAAAGGATGGAGAAACATGAGCAGTGCTGGTCTTGCAAGACATAGAGCCAAGTCTATGCCTATCTCGGAGGCCTTCCAGCCCATAAAAGCCATGGCCGTTGATCTATTCCCACATACTGAACACTGTGAACTGGTGATGCTCCTCGAGAGGTAG 2502 0.4476 MAETGNTELSLSTSKTLNPSDPINSSHSSQVPAENAQIHQVSSSTAAQPSDDVVSGEKRKREVSDSGVSDTSLNPLWKTSLCSYFRRQDSSCSHGSECCYAHGEEELRPRPDNTWDPTSERAKKAMKSDTGEKCTVSFWVMMTEAVVDDADGEDNDDSNHALSKCLVHLPSKWGSDTLRRFLNQEGIPFKSAKKKKGMLVGFVTFEDQEQLKSSTKELEGKLIGSKSLKVVDVIPRSFEKKSNSNVTLCAASAQNADAALAKENTDGNVDSETNGANLAVGDSKPKRRSLCDVVTPLAHMAYGDQLEHKKGFLTQILKRLTRNARKACPSGVSLPEWILKSRDIGGLPCKLEGIIGSPRVNGYRNKCEFSVGYSVEGKITVGFMLGNFREGVTAVEEAVDCLNTSTIALQYASIFQEFLQHSQLPIWNRFKNSGFWRQLTVREGRTNEKVADAEDSGCIAEVMLMVQVSTMGFDNEQVTGEFDKLAQAFLAGANACSPSLPLSALVVQDHQGISNVAPADAPLRSLLTPKAVGDQINEKDGTMDVRIHDYISNLKFSISPTAFFQVNTLAAEKLYSLAGDWACLGPDTLLFDICCGTGTIGLTLAHRVGMVIGVEMNASAVSDAQRNAEINGIKNCRFICAKAEDVMGSLLKEYLNKPKEQVDVPSICGTDDEEIPEGSICHEAENGEQESQCSENGRQEGEIEVQRGSDSENGNSLMQQFKHVVAIVDPPRAGLHPTVIKALRTNQGLRRLVYISCNPESLVANAIELCAPSPVKMEKGNKNKGWRNMSSAGLARHRAKSMPISEAFQPIKAMAVDLFPHTEHCELVMLLER 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g1319 833 SUPERFAMILY RNA-binding domain, RBD 168 239 IPR035979 GO:0003676
Lele31g1319 833 Gene3D - 69 110 - -
Lele31g1319 833 Gene3D - 165 252 IPR012677 -
Lele31g1319 833 MobiDBLite consensus disorder prediction 107 127 - -
Lele31g1319 833 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 295 833 IPR029063 -
Lele31g1319 833 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 77 104 IPR000571 GO:0046872
Lele31g1319 833 Pfam tRNA (Uracil-5-)-methyltransferase 719 769 IPR010280 GO:0006396|GO:0008173
Lele31g1319 833 ProSiteProfiles Zinc finger C3H1-type profile. 76 105 IPR000571 GO:0046872
Lele31g1319 833 CDD AdoMet_MTases 592 664 - -
Lele31g1319 833 ProSitePatterns RNA methyltransferase trmA family signature 1. 729 761 IPR030390 -
Lele31g1319 833 CDD RRM_SF 165 230 - -
Lele31g1319 833 MobiDBLite consensus disorder prediction 683 715 - -
Lele31g1319 833 MobiDBLite consensus disorder prediction 1 51 - -
Lele31g1319 833 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE 94 833 IPR045850 -
Lele31g1319 833 ProSiteProfiles SAM-dependent methyltransferase RNA m(5)U-type domain profile. 293 833 IPR010280 GO:0006396|GO:0008173
Lele31g1319 833 Pfam Methyltransferase domain 590 652 IPR025714 -
Lele31g1319 833 SUPERFAMILY CCCH zinc finger 75 109 IPR036855 GO:0046872
Lele31g1319 833 MobiDBLite consensus disorder prediction 1 70 - -
Lele31g1319 833 Gene3D Vaccinia Virus protein VP39 530 832 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g1319 Lele-ChrLele31 19224560 19231057 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele31g1319 tRNA_U5-meth_tr 1.8e-07 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g1179 30 14649845 14653453 Lele31g1319 31 19224560 19231057 hybridization