Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g1318 ATGCTTGCTGCACAGCCTGAGAAAAAGCCCGTCAGTGAAGGACATGATGCGGTTTCGTGTCAAAGAACAGCCTCTCTTCCAGCTCACAAGGTTGATAATACAATGGGAATAAGTGAAGAGTCCACACATACTCCTCGCTGGAAGCGAGAGAATCTTTCACTGCAAATACCCTCAAGAACATCAGAAGAGTCTTCTCAAGATTTTGTAACTATCAAGATGCCTCAGACTCCAAGTCCTTCTCCAACTCCCAAGAGAGTAAATTTTCTGGTGACTTCTCTCTCTGTTGATACCTCCATTAATAAGTCTCCAGGACCTTCAGCATCAAGAGGAAGACCATCCATAAGAAGTCTCTTACCGAAACTGAGCTTTATTTCTCGGGCGTCATCAGATGTTGAAAAGGCTTCTATTGCAGCTTCAGAAGGTTCCTCTTCAGGGACTCGAGAAAAGCCTTCAATCTCAAGAACCTTGTCCCTTACTAAAATATTTACTCCCAGGATTAAGAGGACCTCATCTTTGCCAGTGGATGAATTTGCACATTCCAATTCAGAATCTGCTCGTGCTGGAACTGTTGGCACTCCTTTGCAGAGAAGCTCTGCTCAGAGGCAGATAGTTCGCTCCCTTTCAGTGCCTGTCAACAATAAAGAGAAAAGCTTAAGGAGAATGGATTTATTTTTCCGTGTTATTCCTTCAACCCCACGAGTGAAGGATGGAATTGAATTATCCACAGCATCCCCCACAAAGGATTCTGAAAATGATGTTGCCGATGGTGAAGATATAGCTGAAGAAGAAGCTGTATGTAGAATTTGTATGGTTGATCTATGTGAAGGGGGTGAAACTTTCAAGCTGGAATGCAGCTGCAAAGGTGAACTTGCTCTAGCACACCAAGAATGTGCTATTAAGTGGTTTAGCATCAAAGGAAACAAAACATGTGATGTGTGCAAGCAGGAGGTTCGAAACCTACCTGTCACTCTTCTGCGGATCCAAAGCGTCCGGGCTCGACATACTGGAGCAGGCTGGTCACAGATGGACAATGTGAATGAATATAGGGTTTGGCAAGAAGTGCCTGTTCTAGTCATTGTCAGCATGCTTGCCTATTTCTGTTTTCTTGAGCAGCTATTGGTTGGAAAAATGGGCACTAGTGCAATTGCCATATCTCTTCCGTTTTCATGTGTATTGGGTCTTCTCTCTTCCATGACATCATCCACAATGGTGAAGAGCAGGTTCGTCTGGATATATGCATCAGCACAGTTTGCTCTGGTGGTTCTATTTGCTCATATATTTTACTCCTTGATCCATGTGCAGGCGATCCTGGCAATACTTCTTGCAACATTCGCAGGGTTTGGTGTGGTAATGAGTGGAAGTTCAATTCTGACGGAGTTCTTCAGATGGAGAAGAAGATGCCAGGCTTTATCAGAGCAGAATAATAATGGCCCTCAACTGATGGCACCTAATTCAGGCTCTTCCACTGCCAGGGCGCAGAGCCACCAAAACTCAAGTTAG 1500 0.4447 MLAAQPEKKPVSEGHDAVSCQRTASLPAHKVDNTMGISEESTHTPRWKRENLSLQIPSRTSEESSQDFVTIKMPQTPSPSPTPKRVNFLVTSLSVDTSINKSPGPSASRGRPSIRSLLPKLSFISRASSDVEKASIAASEGSSSGTREKPSISRTLSLTKIFTPRIKRTSSLPVDEFAHSNSESARAGTVGTPLQRSSAQRQIVRSLSVPVNNKEKSLRRMDLFFRVIPSTPRVKDGIELSTASPTKDSENDVADGEDIAEEEAVCRICMVDLCEGGETFKLECSCKGELALAHQECAIKWFSIKGNKTCDVCKQEVRNLPVTLLRIQSVRARHTGAGWSQMDNVNEYRVWQEVPVLVIVSMLAYFCFLEQLLVGKMGTSAIAISLPFSCVLGLLSSMTSSTMVKSRFVWIYASAQFALVVLFAHIFYSLIHVQAILAILLATFAGFGVVMSGSSILTEFFRWRRRCQALSEQNNNGPQLMAPNSGSSTARAQSHQNSS 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g1318 499 PANTHER OS02G0165000 PROTEIN 28 476 - -
Lele31g1318 499 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 252 321 IPR013083 -
Lele31g1318 499 CDD RING_CH-C4HC3_MARCH 266 314 - -
Lele31g1318 499 MobiDBLite consensus disorder prediction 178 197 - -
Lele31g1318 499 MobiDBLite consensus disorder prediction 474 499 - -
Lele31g1318 499 SMART ringv_2 265 314 IPR011016 GO:0008270
Lele31g1318 499 ProSiteProfiles Zinc finger RING-CH-type profile. 258 320 IPR011016 GO:0008270
Lele31g1318 499 SUPERFAMILY RING/U-box 262 317 - -
Lele31g1318 499 MobiDBLite consensus disorder prediction 1 84 - -
Lele31g1318 499 MobiDBLite consensus disorder prediction 48 75 - -
Lele31g1318 499 Pfam RING-variant domain 266 313 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g1318 Lele-ChrLele31 19214788 19220572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g1318 252 369 C3H Transcription Factor Family AT2G37950 34.921 8.50e-14 68.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0231 29 1335786 1348843 Lele31g1318 31 19214788 19220572 hybridization
Lele30g1177 30 14639707 14647634 Lele31g1318 31 19214788 19220572 hybridization