Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g1309 ATGCCGCCCAAGTTCGATCCCTCACAGGTCGTCGATGTGTTTGTCCGCGTCACCGGAGGTGAGGTAGGTGCGGCCAGTTCCCTTGCCCCTAAGATCGGTCCTCTCGGCCTTTCTCCTAAGAAGATTGGTGAAGACATAGCGAAGGAGACTGCTAAGGACTGGAAGGGATTGAGAGTTACTGTTAAGCTCACCGTCCAGAACCGTCAGGCCAAGGTGTCCGTCGTGCCATCTGCAGCGGCGCTCGTTATCAAGGCCTTGAAAGAGCCCGAGCGAGACCGCAAGAAGACTAAGAATATTAAGCACAATGGCAACATATCCCTCGATGATGTGATTGAGATTGCAAGAACTATGAGGCCAAGGTCGATGGCTAAGGACCTTTCTGGTACTATAAAGGAAATCCTCGGTACTTGTGTCTCTGTTGGTTGCACTGTGGACGGGAAGGACCCCAAGGACTTGCAGCAGGAAATCACTGATGGAGATGTTGAAATGTGCCATTCTGCCTTAAGGTTTCTTGATGCATTGCCAATGACGTTGAGAGCATATTGTATTCGTTTTCTACTTGTGTTCAGGATCAGATTTTCTTGGGCGAAAAACAAACAAAGAAGTCAGATTTCCGCTGCTTATTGCATCCGAATCCCCATCAAAACGGGCATGCGTTTCTGTCCGAAGCTGCCCGTGGTGCCAGACCCACTCCCATTTGTTGAGTACTCGTCACGTAATGCAAGCCCATCTATATGGAAGGCCTCAAGGAATGGGAAATGGACAAGCGTGGGCCACTCCTCAATGAGTAACTCCACGTGGGATCTGGAAGATTCCTAG 819 0.5006 MPPKFDPSQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARTMRPRSMAKDLSGTIKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEMCHSALRFLDALPMTLRAYCIRFLLVFRIRFSWAKNKQRSQISAAYCIRIPIKTGMRFCPKLPVVPDPLPFVEYSSRNASPSIWKASRNGKWTSVGHSSMSNSTWDLEDS 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g1309 272 FunFam 60S ribosomal protein L12 82 164 - -
Lele31g1309 272 CDD Ribosomal_L11 13 144 IPR000911 GO:0003735|GO:0005840|GO:0006412
Lele31g1309 272 MobiDBLite consensus disorder prediction 253 272 - -
Lele31g1309 272 Gene3D - 82 164 IPR036769 -
Lele31g1309 272 SUPERFAMILY Ribosomal L11/L12e N-terminal domain 1 87 IPR036796 -
Lele31g1309 272 Gene3D - 1 81 IPR036796 -
Lele31g1309 272 Hamap 50S ribosomal protein L11 [rplK]. 9 146 IPR000911 GO:0003735|GO:0005840|GO:0006412
Lele31g1309 272 SUPERFAMILY Ribosomal protein L11, C-terminal domain 76 149 IPR036769 -
Lele31g1309 272 Pfam Ribosomal protein L11, N-terminal domain 15 69 IPR020784 -
Lele31g1309 272 Pfam Ribosomal protein L11, RNA binding domain 75 144 IPR020783 GO:0003735|GO:0005840|GO:0006412
Lele31g1309 272 PANTHER 60S RIBOSOMAL PROTEIN L12 1 151 IPR000911 GO:0003735|GO:0005840|GO:0006412
Lele31g1309 272 ProSitePatterns Ribosomal protein L11 signature. 131 146 IPR020785 GO:0003735|GO:0005840|GO:0006412
Lele31g1309 272 SMART rl11c 13 145 IPR000911 GO:0003735|GO:0005840|GO:0006412
Lele31g1309 272 FunFam 60S ribosomal protein L12 1 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g1309 Lele-ChrLele31 19179140 19181083 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g1309 1 163 Cytoplasmic Ribosomal Protein Gene Family AT2G37190 88.957 8.56e-105 300
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0240 29 1383438 1383938 Lele31g1309 31 19179140 19181083 hybridization
Lele30g1168 30 14606307 14607347 Lele31g1309 31 19179140 19181083 hybridization