Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g1304 ATGGCGATGGCTGTGGCTCACCACAGAGAAAGCAGCAGCGGGAGCATCAGCAAGCACCTTGATTCCGGCAAGTATGTCCGATACACAGCGGAGCAAGTTGAAGCGCTGGAACGCGTTTATGCCGAGTGCCCCAAGCCCAGCTCCTTGCGAAGGCAACAACTGATCCGAGAGTGCCCTATTCTCTCCAACATCGAGCCCAAGCAGATCAAAGTTTGGTTCCAAAATCGCAGGTGCAGAGAGAAGCAGAGAAAAGAGGCAGGATGTCTCCAGACGGTGAACAGGAAACTGTCCGCGATGAACAAGTTGTTGATGGAGGAAAATGAGCGGTTGCAAAAGCAGGTTTCCCAACTAGTATGCGAAAATGGGTTCATGAGGCAGCAATTGCATAGTGCGTCATCGGCAACTACTGATGCAAGTTGTGATTCGGTGGTCACCACCCCTCAACACTCCTTAAGAGATGCCAATAACCCTGCTGGACTCCTATCAATTGCTGAGGAGACCTTGGCAGAGTTCCTTTCAAAGGCTACTGGAACTGCTGTCGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCTGTTGGGATCTTTGCCATTTCGCGAAGTTGCAGTGGAGTGGCAGCTCGAGCGTGCGGTCTTGTTGGTTTAGAACCTACAAAGATTGTGGAGATCCTAAAAGATCGTCCATCTTGGTTTCGCAACTGCCGGAATCTTGAAGTATTTACAATGTTTCCTGCCGGCAATGGTGGGACAATTGAACTCATTTACACACAGACATATGCTCCAACTACATTGGCTCCGGCCCGGGATTTCTGGACTCTAAGATACACTACAAGTTTGGACAATGGAAGTCTTGTGGTTTGTGAGAGATCACTGTCTGGTTCAGGTGCTGGCCCTAATGCAGTGGCTGCTGCTCAGTTTGTGAGAGCTGAAATGCTTCCAAGTGGCTACCTGATTCGACCATGTGAAGGTGGAGGATCAATCATCCATATTGTAGACCACTTAAATCTCGAGGCATGGAGTGTGCCAGAGGTTCTTAGACCCCTTTATGAATCATCAAAAGTGGTTGCTCAAAAAATGACAATTGCCGCGCTACGCTATATAAGGCAAATAGCTCAGGAAACAAGTGGCGAAGTTGTTTATGGTTTAGGTAGGCAGCCTGCTGTTCTGCGGACTTTCAGCCAAAGGCTAAGCAGAGGTTTCGATGACGCTGTCAACGGATTTAATGATGATGGCTGGTCCATAATGAACTGTGATGGTGCTGAGGACGTGGTTATTGCAGTCAACTCAACCAAGAATCTTTGTGCCACTTCTAATCCTGCAAGTTCCCTAACATTCCTTGGAGGAGTTCTCTGTGCAAAGGCTTCCATGTTGCTGCAGAATGTCCCTCCAGCAGTTTTGGTTCGGTTTTTGAGGGAGCATCGCTCTGAGTGGGCTGATTTCAATGTTGACGCCTATTCTGCTGCATCACTTAAAGCAGGCTCCTTTTCCTATCCTGGCATGAGGTCAACTAGATTCACTGGAAGTCAAATTATCATGCCTCTTGGCCATACAATTGAACATGAAGAGATGCTTGAAGTTGTTCGTCTTGAAGGCCAGGCTCTAGCTCCAGAAGAGGCTTTTGTTTCAAGGGACATTCATCTCTTACAGATATGTAGTGGGATTGATGAAAATGCTGTTGGGGCGTGTTCTGAGCTCGTATTTGCTTCAATTGATGAAATGTTCCCTGATGATGCTCCATTGTTGCCATCGGGTTTCCGCATCATCCCATTGGATTCAAAATCAGGTGATAAGAAGAATGCAGTCTCTGTAAATCGGACCCTAGACTTGACATCTGGTCTTGATGTGGGCCCAGCAACAAATCAAGCTGCAGAAGATGTGTCATCTTGTGATAATAATACTCGGTCGGTGTTGACCATTGCCTTCCAATTTCCTTTTGAGAACAGCTTGCAGGAAAACGTTGCAATTATGGCACGACAGTATGTACGCAGTGTGATTTCATCTGTGCAGAGGGTTGCCATGGCTATATCTCCATCTGGTATAAGCCCACCTGTGGGACCAAAACTCAGTCCCGGCTCTCCTGAAGCCGTTACTCTAGCTCACTGGATATGCCAGAGTTATTGTTTCTATATGGGAGCAGAATTGCTTAGATCTGATTCCCTTGTTGGCGATTTGTTGCTGAAACAATTATGGCATCATCAGGATGCCATTCTGTGTTGTTCAGTGAAGTCTGTGCCTGTGTTCATATTTGCAAACCAGGCAGGGCTTGACATGCTGGAAACAACCCTAGTAGCTTTGCAAGATTTCACATTGGATAAAATATTTGACGACTCAGGACGCAAGGCTTTGTGTACAGAATTTGCCAAGTTGATGCAGGAGGGGTTCGCATATCTGCCTGCTGGAATTTGCATGTCCATGATGGGACGGCATGTTTCGTATGACCAAGCTCTCGCATGGAAAGTTCTTTCTGAAGATAACAGTGTTCATTGCTTAGCTTTCTCTTTTATAAATTGGTCATTTGTATGA 2529 0.4686 MAMAVAHHRESSSGSISKHLDSGKYVRYTAEQVEALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEAGCLQTVNRKLSAMNKLLMEENERLQKQVSQLVCENGFMRQQLHSASSATTDASCDSVVTTPQHSLRDANNPAGLLSIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISRSCSGVAARACGLVGLEPTKIVEILKDRPSWFRNCRNLEVFTMFPAGNGGTIELIYTQTYAPTTLAPARDFWTLRYTTSLDNGSLVVCERSLSGSGAGPNAVAAAQFVRAEMLPSGYLIRPCEGGGSIIHIVDHLNLEAWSVPEVLRPLYESSKVVAQKMTIAALRYIRQIAQETSGEVVYGLGRQPAVLRTFSQRLSRGFDDAVNGFNDDGWSIMNCDGAEDVVIAVNSTKNLCATSNPASSLTFLGGVLCAKASMLLQNVPPAVLVRFLREHRSEWADFNVDAYSAASLKAGSFSYPGMRSTRFTGSQIIMPLGHTIEHEEMLEVVRLEGQALAPEEAFVSRDIHLLQICSGIDENAVGACSELVFASIDEMFPDDAPLLPSGFRIIPLDSKSGDKKNAVSVNRTLDLTSGLDVGPATNQAAEDVSSCDNNTRSVLTIAFQFPFENSLQENVAIMARQYVRSVISSVQRVAMAISPSGISPPVGPKLSPGSPEAVTLAHWICQSYCFYMGAELLRSDSLVGDLLLKQLWHHQDAILCCSVKSVPVFIFANQAGLDMLETTLVALQDFTLDKIFDDSGRKALCTEFAKLMQEGFAYLPAGICMSMMGRHVSYDQALAWKVLSEDNSVHCLAFSFINWSFV 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g1304 842 CDD START_ArGLABRA2_like 157 373 - -
Lele31g1304 842 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 20 842 IPR044830 GO:0003700
Lele31g1304 842 Gene3D - 198 379 IPR023393 -
Lele31g1304 842 Gene3D - 16 87 - -
Lele31g1304 842 SUPERFAMILY Bet v1-like 162 374 - -
Lele31g1304 842 ProSiteProfiles 'Homeobox' domain profile. 19 83 IPR001356 GO:0003677
Lele31g1304 842 SMART HOX_1 21 87 IPR001356 GO:0003677
Lele31g1304 842 Coils Coil 89 120 - -
Lele31g1304 842 Pfam START domain 163 370 IPR002913 GO:0008289
Lele31g1304 842 ProSiteProfiles START domain profile. 153 381 IPR002913 GO:0008289
Lele31g1304 842 FunFam Homeobox-leucine zipper protein REVOLUTA 24 79 - -
Lele31g1304 842 CDD bZIP 76 115 - -
Lele31g1304 842 SMART START_1 162 372 IPR002913 GO:0008289
Lele31g1304 842 Pfam MEKHLA domain 699 841 IPR013978 -
Lele31g1304 842 Pfam Homeodomain 24 82 IPR001356 GO:0003677
Lele31g1304 842 SUPERFAMILY Homeodomain-like 22 86 IPR009057 -
Lele31g1304 842 CDD homeodomain 24 84 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g1304 Lele-ChrLele31 19138846 19144677 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g1304 1 842 Homeobox Transcription Factor Family AT5G60690 81.037 0.0 1426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele31g1304 START 7.9e-48 CL0209
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0246 29 1428165 1433802 Lele31g1304 31 19138846 19144677 hybridization
Lele30g1163 30 14553143 14566094 Lele31g1304 31 19138846 19144677 hybridization