Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g1292 ATGAAGATTGGGTCCGACCCGATGGCCGTGGCTTCCACCAGTGCAGGCCTGCCTAATTTGGAAACACAAAGGTTTGGGCCAAGGGAGAGTAAGAAGGCCATGATGTACAGTGACATAGGGCGTCTAAATTGCAATGTAAGCTTTACAACATTTGCAACTCCCGTTCGTGGCCAGGGATTGGACAACAAAGAATACACTGCAATGCTTCATAAGGCTTTGGAGGGTTCAATAATGTTGGAAACTTTTCCCAAGACCACTGTGGATGTTTTTGCATTGGTACTGGAATCTGGTGGCAGTGATCTCCCAGTTGTCATATCATGTGCTAGCCTTGCCCTAGCAGATGCTGGAATAATGATGTATGACCTTATTGCCTCAGTTTCTGTGTCTTGTCTCGGTAAGAACCTGGTTATTGATCCTATTTCGGAGGAGGAAAGCTCTCAAGATGGAAGCTTTTTGATAACTTGCATGCCTTCTCGTTATGAAATCACCCAGCTCACCGTTACTGGGGATTGGTCCACCCCGAAGGTTAACGAGGGAATGCAACTATGCTTAGATGCTTGTGCAAAGCTTGCAAAGATCATGAGGTCATGTCTGAAAGAATCTGCTCAAGGGACTAGCGGTTGTGGGAGTTGTATTGAATTGAATGGAACCGCCGGGGATAGCTTTTTGCTTTTGCATGAAGACCAGAGGAAAGAGTGTGCAAACGGAAGATGTTGGGTTTTTGCAGAGGAATACCTGGGAATCTGTCTCTCTTCAGTTCATGCATCTCCCCTGTTTGTTGGAATACCTAAAAATATGGGCTTTGGAAATGCAAGATCTGTAAGATTTCAAGATGATCTTGAACAAGCAAATATCCCCGCGACTAACAGTGACAACGGGATCAAGGTTAAATACAACATTGATGGAGTACAAATACAAGAGCCAAGCAGCACCAAAATGGCTCAGAAGAAGGAGACAGCAGGCAAGACTGGGAAGTTCTTGAAAGGTAGAGTTCTGTCAAGAGTATTCTCAGAGGACTACGAAAGAGTGAAAAGAAAGATACTAGATCCTCGAGGACAAACCATTCATCGATGGAACAAGATTTTCTTGGTTGCATGTTTGATATCTCTGTTTGTGGACCCTCTATTCTTTTTCTTGCCAGTCGTTCGAGATGAAGTGTGCATTGAGATTGGAATAATACCTGAAGTTATCCTCACAATCGTCAGAACAGTTGCAGATTTCTTTTACATGTTTCAGATTTTCATGAAGTTTCGTACAGCTTATGTCGCGCCTTCCTCTCGAGTATTTGGGAGAGGAGAACTTGTTATTGATTCTTCTAAGATTGCATTTAGGTACTTCAGAAAGAGTTTCTGGTTAGACTTTGTTGCAGCTATGCCTCTTCCACAGGTGTTGATTTGGCTTGTCATACCCTTCCTCAGGGGTTCTACCATGGCAAACACAAAAAATGTCCTTCGTTTCATCATCATCTTTCAGTATCTCCCTAGGCTGTTTCTTATTTTCCCTCTTTCATCGCAAATTGTAAAGGCCACCGGTGTCGTGACACAAACAGCATGGGCCGGTGCAGCTTACAACCTCATGCTTTATATGTTGGCAAGCCATGGTTTAGGTGCTATTTGGTACCTTCTATCAATTGAGCGACAGGAAGCATGCTGGAGAAGGGTCTGTGATCAGGAAAAGTCATATTGTCAATACGGATACTTTGACTGCCACAGGGTCAACGAAGCCAGTAGGGTCGCCTGGTTCATTGCAAGCAATGTCACAAATTTATGCTCACCTGATGTCAACTTTTATCCCTTTGGCATGTACGGTGATTCAGTCACTTCTCAAGTCACAAGCTCCCCATTCTTTAACAAGTATTTCTACTGTCTTTGGTGGGGCTTAAGAAATCTCAGTTCTCTAGGACAAAATCTTCTCACTAGCACTTTTGTTGGAGAAATCGTGTTTGCCATCGTAGTTGCGACCCTTGGATTGGTTCTTTTTGCCTTGCTTATTGGTAATATGCAGACATACCTTCAATCGACAACCGTCCGCTTAGAAGAGTGGAGAGTCAAAAGAACTGATACAGAACAATGGATGCATCACAGGCAGCTACCTCCAGAACTAAGACAATCTGTAAGGAAGTATGATCAATACAAATGGTTGGCTACCAGAGGAGTTGATGAAGAGGCTCTTCTTAAAGGACTTCCTGTGGATCTTCGAAGAGACATCAAACGCCACCTTTGCCTTGACCTTGTCCGAGGCGTTCCATTATTTGATCAAATGGATGAGAGGATGCTGGACGCAATATGTGAGAGGCTGAAGCCTGCATTGTGCACGGAGGGAACTTACCTTGTTCGTGAGGGTGATCCAGTGAATGAGATGCTGTTCATAATAAGGGGCCATCTGGATTCCTACACGACCAATGGTGGCCGAACCGGGTTCTTCAATTCATGCCGGATTGGTCCGGGCGATTTCTGTGGAGAGGAAATATTGACATGGGCATTGGACCCTAGGCCCAGTGTGATACTTCCATCTTCTACTAGAACAGTGAAAGCCATCTCAGAAGTAGAAGCCTTTGCACTCATGTCAGAGGATCTCAAGTTTGTGGCGTCTCAGTTCAGAAGGCTGCACAGTAAACAGCTGAGGCACAAGTTCAAGTTTTACTCGCACCAATGGCGAACATGGGCCGCTTGTTTCATCCAAACTGCATGGAGAAGGTTCAAGAAAAGGAAACTGAGGGCTAAATTGAACCAAACTGATGCAGAGCCTGAAACACCAAGGTATGGTGGTTCATCAGGCTTTGTTGTGTATGGATCCAGGATGGGTAGGAACACTGTAAAAGGGGTTTCTGGGGTTGTAAGCCCTCTTCAGAAGCCTGAAGAACCAGATTTTACTGTTGATGAGTAA 2886 0.4463 MKIGSDPMAVASTSAGLPNLETQRFGPRESKKAMMYSDIGRLNCNVSFTTFATPVRGQGLDNKEYTAMLHKALEGSIMLETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMMYDLIASVSVSCLGKNLVIDPISEEESSQDGSFLITCMPSRYEITQLTVTGDWSTPKVNEGMQLCLDACAKLAKIMRSCLKESAQGTSGCGSCIELNGTAGDSFLLLHEDQRKECANGRCWVFAEEYLGICLSSVHASPLFVGIPKNMGFGNARSVRFQDDLEQANIPATNSDNGIKVKYNIDGVQIQEPSSTKMAQKKETAGKTGKFLKGRVLSRVFSEDYERVKRKILDPRGQTIHRWNKIFLVACLISLFVDPLFFFLPVVRDEVCIEIGIIPEVILTIVRTVADFFYMFQIFMKFRTAYVAPSSRVFGRGELVIDSSKIAFRYFRKSFWLDFVAAMPLPQVLIWLVIPFLRGSTMANTKNVLRFIIIFQYLPRLFLIFPLSSQIVKATGVVTQTAWAGAAYNLMLYMLASHGLGAIWYLLSIERQEACWRRVCDQEKSYCQYGYFDCHRVNEASRVAWFIASNVTNLCSPDVNFYPFGMYGDSVTSQVTSSPFFNKYFYCLWWGLRNLSSLGQNLLTSTFVGEIVFAIVVATLGLVLFALLIGNMQTYLQSTTVRLEEWRVKRTDTEQWMHHRQLPPELRQSVRKYDQYKWLATRGVDEEALLKGLPVDLRRDIKRHLCLDLVRGVPLFDQMDERMLDAICERLKPALCTEGTYLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEEILTWALDPRPSVILPSSTRTVKAISEVEAFALMSEDLKFVASQFRRLHSKQLRHKFKFYSHQWRTWAACFIQTAWRRFKKRKLRAKLNQTDAEPETPRYGGSSGFVVYGSRMGRNTVKGVSGVVSPLQKPEEPDFTVDE 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g1292 961 Gene3D Helix hairpin bin 678 741 - -
Lele31g1292 961 FunFam Cyclic nucleotide-gated ion channel 1 748 866 - -
Lele31g1292 961 FunFam Exosome complex component RRP41-like 2 203 - -
Lele31g1292 961 Pfam Cyclic nucleotide-binding domain 773 860 IPR000595 -
Lele31g1292 961 SUPERFAMILY cAMP-binding domain-like 680 875 IPR018490 -
Lele31g1292 961 Gene3D Jelly Rolls 748 868 IPR014710 -
Lele31g1292 961 FunFam Cyclic nucleotide-gated ion channel 1 677 741 - -
Lele31g1292 961 Pfam Ion transport protein 358 677 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lele31g1292 961 SUPERFAMILY Ribosomal protein S5 domain 2-like 32 145 IPR020568 -
Lele31g1292 961 Pfam 3' exoribonuclease family, domain 1 25 117 IPR001247 -
Lele31g1292 961 Gene3D - 9 206 IPR027408 -
Lele31g1292 961 SUPERFAMILY Voltage-gated potassium channels 349 672 - -
Lele31g1292 961 CDD CAP_ED 750 881 IPR000595 -
Lele31g1292 961 SMART cnmp_10 750 881 IPR000595 -
Lele31g1292 961 ProSiteProfiles cAMP/cGMP binding motif profile. 750 847 IPR000595 -
Lele31g1292 961 Gene3D - 361 674 - -
Lele31g1292 961 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 335 957 - -
Lele31g1292 961 SUPERFAMILY Ribonuclease PH domain 2-like 119 203 IPR036345 -
Lele31g1292 961 CDD RNase_PH_MTR3 25 200 - -
Lele31g1292 961 PRINTS EAG/ELK/ERG potassium channel family signature 530 540 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele31g1292 961 PRINTS EAG/ELK/ERG potassium channel family signature 413 422 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele31g1292 961 PRINTS EAG/ELK/ERG potassium channel family signature 645 656 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele31g1292 961 PRINTS EAG/ELK/ERG potassium channel family signature 713 720 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele31g1292 961 PRINTS EAG/ELK/ERG potassium channel family signature 619 636 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele31g1292 961 PRINTS EAG/ELK/ERG potassium channel family signature 663 672 IPR003938 GO:0005249|GO:0006813|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g1292 Lele-ChrLele31 19043499 19054074 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g1292 324 960 Ion Channels AT2G28260 75.667 0.0 1025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0259 29 1517136 1525887 Lele31g1292 31 19043499 19054074 hybridization
Lele30g1154 30 14462007 14472079 Lele31g1292 31 19043499 19054074 hybridization