Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g1284 ATGCAACCCACCGGCCCCTTCCCCTTTTGTACACCGCACCATGGGCCCCTTCTTCCTCTCCAAGACCATCTCTGTTCTGCTTCTTCTCCTCCATCAATCTTTGCTGGAGCACCGAAGCTCCATAATCAGACACACTCTATTTCAAACTTCCAAGAGGAAAGCTTTGCCGGTGTCAGAAATGAGGACTTGGTCGACGTGGGAGAAGAAGGTAGAGAGGAAGAAGAGGCTGACGTTGCGGTGTGGGGGGAGGAGGAAGGGGTTGAGTTGGAATCAATGGAGAAAGTTGCAGCCACAGGGCTCTTGATTTGCTGTTTATTCGCTGTACTTTGTTTGCTGTCTTTCCCAGCAACTTGTTCAGAAGTCGAGGATGAAAGTGAGTTTAGTTACGACGAAGATTCAGACAGAGGACCATCTCGATGGGGAGATATAAAACCAGAATGGATACTGTGCAAAACTGGAACAATGCAATCACCCATTGATTTGATTAATGAAAGGGTTCAAGGTGTGTCCCATTTAGGGCCCCTCCAAATCCAGTATCGCCCTTCCAATGCCACTCTTAAAAATAGAGGCCATGATATCAAGTTGGAATGGGCTGCAGGAGCAGGCTATCTTCAAATCAACAAAACTCAGTATGTTCTCAAACAATGCCACTGGCATTCTTTCTCAGAACATACCATCGATGGCCAAAGATATGATCTAGAGTTACATATGGTGCACGAAACGGTAAAAGGAGAAATAGCCGTAGTTGGGATACTGTACAAGTTTGGTGAACCAGATCCTTTCCTGTCATCGTTAAGGGATGAGTTAAAGGCCATATCTGATACGAATAAAACAGAAGAAAACGCGGGAATAGTTGATCCTTGGCTGATTAAACCAAGTAGCAAGAGGTATTACAGATACATGGGTTCTCTCACCACACCTGATTGTGCTGAAAACGTTGTTTGGACCATCCTTGCTGAGGTGAGAACTGTTTCAACAGAGCAAGTCGAGATGCTTCGAGATGCTGTTCATGACGATTCAGAGAATAATGCTAGACCACTGCAGCCAATAAACAACCGTTTGGTGCAATTCTATCAACCAAAGGATTCTAAAACTGATTGA 1101 0.4505 MQPTGPFPFCTPHHGPLLPLQDHLCSASSPPSIFAGAPKLHNQTHSISNFQEESFAGVRNEDLVDVGEEGREEEEADVAVWGEEEGVELESMEKVAATGLLICCLFAVLCLLSFPATCSEVEDESEFSYDEDSDRGPSRWGDIKPEWILCKTGTMQSPIDLINERVQGVSHLGPLQIQYRPSNATLKNRGHDIKLEWAAGAGYLQINKTQYVLKQCHWHSFSEHTIDGQRYDLELHMVHETVKGEIAVVGILYKFGEPDPFLSSLRDELKAISDTNKTEENAGIVDPWLIKPSSKRYYRYMGSLTTPDCAENVVWTILAEVRTVSTEQVEMLRDAVHDDSENNARPLQPINNRLVQFYQPKDSKTD 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g1284 366 ProSitePatterns Alpha-carbonic anhydrases signature. 222 238 IPR018338 GO:0004089|GO:0008270
Lele31g1284 366 Gene3D Alpha carbonic anhydrase 123 365 IPR036398 -
Lele31g1284 366 ProSiteProfiles Alpha-carbonic anhydrases profile. 125 359 IPR001148 -
Lele31g1284 366 SMART Carb_anhydrase_2a 129 357 IPR001148 -
Lele31g1284 366 FunFam Alpha carbonic anhydrase 3 124 363 - -
Lele31g1284 366 PANTHER CARBONIC ANHYDRASE 124 353 IPR023561 GO:0004089|GO:0008270
Lele31g1284 366 Coils Coil 262 282 - -
Lele31g1284 366 Pfam Eukaryotic-type carbonic anhydrase 136 357 IPR001148 -
Lele31g1284 366 SUPERFAMILY Carbonic anhydrase 126 355 IPR036398 -
Lele31g1284 366 CDD alpha_CA_prokaryotic_like 136 357 IPR041891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g1284 Lele-ChrLele31 18980791 18984562 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0266 29 1568430 1570732 Lele31g1284 31 18980791 18984562 hybridization
Lele30g1147 30 14414315 14417050 Lele31g1284 31 18980791 18984562 hybridization