Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g1276 ATGAACTACATAATCAGGAGGGTTGCTTTGGTTTTCATTGTTGCATTAAGCTGCTATTCGGAGCAAGTTTCATGTCAGAGCACCAATAAAAGCCAAGCTGCGGTTCAGCTCGTAGCCCAGGCCGTTTACGGAAGCATGTCTAGTTTCACGGGTGTCTTCAAGGATGAAATAAAAAAGAATTTGGGTTTCTGCATTGTTGATGTAGATGCTGATTGGGATGGGGCCTTTAATTTCACAAATGATCTGACATTTTTGACCTCATGTTCCCAATCTTTAAAAGGAGATATTTCACAGCGCATATGCACAGCAGCAGAAATTAAGTTATATGCTAGTGGTTTTGACATAAAATCAAAGAGCCAAGCTAACAACTTGCAGCCAAACAAGAACTGTAACTTGAGCGTTTGGCTTAATGGATGTGAGCCTGGATGGGGCTGTATTGCTGCTGAGAAAGTTCAACTTAACAATACTAAGGACATCCCTGACAGGTCTACTGACTGTCAGCCTTGTTGTCCGGGTTTCTTTTGCCCACGCGGCATTACTTGCATGATACCTTGCCCTTTGGGTTCTTACTGTCCACGTGCACAGCTCAATCAAGCCACTGGAATATGTGAACCGTATCATTATCAGCTACCTGCAGGAAAGACAGACCACAGTTGTGGGGGAGCAGATGTTTGGGCAGACATTTCAAGCAGTTGGGATGTTTTCTGTTCAGCTGGATCTTACTGTCCGTCCTCCATCCAAAAAAATCCTTGCACTCAGGGACATTATTGCAGGACGGGTTCAATCCATCAAGAAAGTTGTTTCAAATTGGCGAGTTGTAAGCCTCAATCAGCTAATCAAAATATAACTGCATATGGTGTCATGGCTGGCTTGAGCTTCTTGCTTATCATCATATATAATTGTTCTGACCAAGTTCTTGCAACTCGAGAGAGAAGAATAGCAAAATCAAGAGAAAGGGCTGCTGCAAGTGTAAGAGAAACACAAGCACGTGAAAAATGGAAATCAGCTAAAGATATTGCTAAGAAGCATGCAGTAGGACTGCAAAGTTCTTTATCACGTACGTTTTCTCGTAGAAAATCTATGAAGGGAGATCTGAAAGCTTTTGGTTCTAAATCTGCATCAGAAACTCCATTTCCACCTGCGCCACCAGCAGGTGATGGTACATCATCTGCAGCATCAAAAGGAAAAAAGGATAAAAACAGCCTCACAAAAATGATCCAGAGCATTGAGGAAGACCCTGATAATCAAGAAGGCTTTAATGTTGAGATAGGAGATAAAAATATCAAAAAACAAGCACCAAAAGGCAAGCAATTGCATACGCAAAGCCAAATTTTTAAGTATGCGTATGGTCAGATTGAAAAAGAAAAGGCTATGCAGGAACAAAACAAGAACCTGACCTTCTCTGGAGTTATCTCAATGGCTAGTGATATTGAGTACAGGAAGAGGCCTACAATTCAGGTTGCTTTCAAAGATTTAACTCTCACTTTGAATGCCAAAAACAAGCATCTTCTAAGATGTGTGACTGGGGAACTAAATCCTGGTCGAGTTTCAGCAGTCATGGGCCCATCTGGGGCTGGTAAAACAACATTTCTTTCTGCTTTAACTGGAAAAGCAACTGGATGTCATACAACTGGCTTAGTTCTTATAAATGGCAAGGTTGAATCTATCCGGTCATACAAGAAGATCATTGGGTTTGTGCCACAAGATGATATTGTGCATGGCAATTTGACAGTAGAAGAGAATCTGTGGTTCAGTGCCAGATGCAGACTTTCAGCTGATCTACAAAAAGCAGAGAAGGTTCTAGTAGTTGAAAGAGTTATTGAGTCGTTAGGTCTGCAAGCAATCCGAGATTCTCTGGTTGGAACGGTGGAGAGGCGTGGAATCTCTGGAGGTCAAAGAAAACGAGTGAATGTAGGACTGGAAATGGTTATGGAACCTTCACTCCTGATTTTAGATGAACCAACATCTGGTTTAGATAGTTCATCTTCTCAGTTATTGCTTAGAGCACTTAGACGAGAGGCTCTAGAGGGTGTAAATATATGCATGGTCCTTCACCAACCAAGTTACACACTGTTCAGGATGTTTGATGATTTTATACTACTCGCTAAAGGTGGTCTTATAGTGTATCTTGGACCTGTGAAGAAAGTTGAAGAGTATTTTTCCAGCTTGGGGATTGTTGTTCCTGATCGTGTTAATCCTCCAGATTATTACATAGACATTTTAGAAGGGATAGTAAAACCAAGCTCAAGTACAGCAGTAAACTATAAACAACTACCTGTTAGATGGATGCTTCACAATGGGTATCCTGTTCCTCTGGACCTGCTTCAGGGTGTTGAAGGAATGGAAGGCGCAAGCGGTGAAAGTTCCACCCATGGGGCAGCTACTCCAGCAGCAGAAACCGAAGACCCGTCTTTAGCTGGGGAAATTTGGCAGGATGTAAAAGTCCATGTTGAGAAGAAGAAAGACTACCTTAAATATACTTTCTTTACATCAAATGATTTATCTAATCGGGTAACCCCTGGAGTCTTCCAACAATACAGATACTTTCTCGGAAGGTCCGGTAAGCAGCGGCTACGAGAAGCTAGAACACAGGCTGTAGATTTTCTAATTTTGTTACTAGCTGGAATATGCTTAGGAACACTTGCCAAAGTGAGTGATGAAACGTTTGGAGCAAATGGTTACACATATACTGTTATAGCAGTTTCACTCCTGTGCAAGATCGCGGCTCTGAGAACATTTTCACTGGATAAGTTGCACTATTGGAGAGAGAGTGCATCGGGCATGAGTAGCCTGGCTTACTTTCTTGCAAAGGATACAGTTGATCATTTTAATACACTCATAAAGCCTGTGGTCTATCTCTCAATGTTCTATTTCTTCAACAATCCTAGATCCTCTGTTGTAGATAACTACTTTGTTTTGGTGTGCTTGGTGTACTGTGTCACTGGCATAGCTTATATATTGGCTATCTCACTTGAACCTGGCCCTGCCCAATTGTGGTCGGTGTTACTTCCAGTAGTTTTGACTCTTATAGCAACCAGTGATAGTGTAGCCGAGAGCTCATTCATGAGCAAGGTAGCTGACGTTTGCTATGCAAAGTGGGCTCTTGAAGCATTTGTGATATCAAACGCTAAAAGATATGCTGGGGTTTGGTTAATAACCCGATGTGGTGCACTAAACATCCGTGGCTATGATCTCAACAACTGGTATCGATGCCTTATTTTTCTTGTGGTAACCGGAGTGCTTAGTCGCATTGCGGCGTTCTTTTGTATGATCACTCTCCAGAAGAAGTAA 3291 0.4202 MNYIIRRVALVFIVALSCYSEQVSCQSTNKSQAAVQLVAQAVYGSMSSFTGVFKDEIKKNLGFCIVDVDADWDGAFNFTNDLTFLTSCSQSLKGDISQRICTAAEIKLYASGFDIKSKSQANNLQPNKNCNLSVWLNGCEPGWGCIAAEKVQLNNTKDIPDRSTDCQPCCPGFFCPRGITCMIPCPLGSYCPRAQLNQATGICEPYHYQLPAGKTDHSCGGADVWADISSSWDVFCSAGSYCPSSIQKNPCTQGHYCRTGSIHQESCFKLASCKPQSANQNITAYGVMAGLSFLLIIIYNCSDQVLATRERRIAKSRERAAASVRETQAREKWKSAKDIAKKHAVGLQSSLSRTFSRRKSMKGDLKAFGSKSASETPFPPAPPAGDGTSSAASKGKKDKNSLTKMIQSIEEDPDNQEGFNVEIGDKNIKKQAPKGKQLHTQSQIFKYAYGQIEKEKAMQEQNKNLTFSGVISMASDIEYRKRPTIQVAFKDLTLTLNAKNKHLLRCVTGELNPGRVSAVMGPSGAGKTTFLSALTGKATGCHTTGLVLINGKVESIRSYKKIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLQKAEKVLVVERVIESLGLQAIRDSLVGTVERRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICMVLHQPSYTLFRMFDDFILLAKGGLIVYLGPVKKVEEYFSSLGIVVPDRVNPPDYYIDILEGIVKPSSSTAVNYKQLPVRWMLHNGYPVPLDLLQGVEGMEGASGESSTHGAATPAAETEDPSLAGEIWQDVKVHVEKKKDYLKYTFFTSNDLSNRVTPGVFQQYRYFLGRSGKQRLREARTQAVDFLILLLAGICLGTLAKVSDETFGANGYTYTVIAVSLLCKIAALRTFSLDKLHYWRESASGMSSLAYFLAKDTVDHFNTLIKPVVYLSMFYFFNNPRSSVVDNYFVLVCLVYCVTGIAYILAISLEPGPAQLWSVLLPVVLTLIATSDSVAESSFMSKVADVCYAKWALEAFVISNAKRYAGVWLITRCGALNIRGYDLNNWYRCLIFLVVTGVLSRIAAFFCMITLQKK 1096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g1276 1096 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 487 729 IPR003439 GO:0005524
Lele31g1276 1096 MobiDBLite consensus disorder prediction 782 802 - -
Lele31g1276 1096 MobiDBLite consensus disorder prediction 350 401 - -
Lele31g1276 1096 Pfam ABC-2 type transporter 685 1096 IPR043926 GO:0140359
Lele31g1276 1096 Gene3D - 476 724 IPR027417 -
Lele31g1276 1096 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Lele31g1276 1096 ProSitePatterns ABC transporters family signature. 628 642 IPR017871 GO:0005524|GO:0016887
Lele31g1276 1096 Pfam ABC transporter 507 656 IPR003439 GO:0005524
Lele31g1276 1096 SMART AAA_5 513 714 IPR003593 -
Lele31g1276 1096 CDD ABCG_EPDR 485 711 - -
Lele31g1276 1096 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 488 725 IPR027417 -
Lele31g1276 1096 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 238 1085 - -
Lele31g1276 1096 FunFam ABC transporter G family member 24 481 723 - -
Lele31g1276 1096 MobiDBLite consensus disorder prediction 317 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g1276 Lele-ChrLele31 18922675 18928400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g1276 466 717 Calmodulin-binding Proteins AT2G36910 25.368 4.22e-11 65.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0272 29 1610927 1616641 Lele31g1276 31 18922675 18928400 hybridization
Lele30g1142 30 14370301 14376052 Lele31g1276 31 18922675 18928400 hybridization