Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g1270 ATGGTACTGTTTTCTCTTCAGGCACTGCACTCCCTCCCTTCATCACCAAAAAGTTCTGTGCTTTGTTCTTCAATACGATCAATGTCTCACCCAGCTGAATCATCTGACTCGAAATCCGGGAAGAAGGACTTCTCGACGGCGATTTTGGAGCGTAAGAAGTCGCCGAATCGACTGGTTGTAGATGAGGCAGTCAACGACGACAACTCAGTGGTGTCGATGCACCCTGAAACCATGGAAAAGCTGCAGCTTTTCCGAGGCGATACTATCCTCATCAAGGGGAAGAAGCGAAAGGATACAATTTGCATAGCCCTTGCTGACGACACATGTGAGGAACCCAAGATCAGAATGAATAAAGTTGTGAGGTCAAATTTGAGGGTTCGTCTTGGGGATGTTGTATCTGTGCATCAGTGCCCTGATGTTAAGTATGGGAAACGTGTGCATATTCTACCCATCGATGATACCGTTGAAGGGGTCACTGGCAATCTGTTTGATGCTTACTTGAAACCTTACTTCTTGGAGGCTTACCGTCCTGTTAGAAAGGGGGATTTGTTTCTTGTCCGTGGAGGGATGAGAAGTGTAGAGTTCAAGGTCATTGAGACTGATCCAGGGGAGTATTGTGTGGTTGCTCCAGACACTGAAATCTTCTGTGAAGGGGAGCCTGTAAAAAGGGAGGACGAGGAAAGGTTGGATGAAGTTGGGTATGATGATGTGGGTGGTGTTAGGAAACAAATGGCACAAATTCGCGAGTTGGTAGAGCTCCCATTGAGGCATCCTCAACTTTTTAAATCAATTGGTGTGAAACCTCCCAAGGGAATTTTATTGTATGGACCCCCAGGTTCCGGGAAGACATTAATAGCAAGAGCTGTTGCCAATGAAACCGGAGCTTTCTTCTTTTGCATCAATGGACCAGAGATTATGTCTAAATTGGCTGGAGAGAGTGAGAGCAATCTCAGGAAAGCATTTGAAGAAGCTGAAAAGAATGCACCATCCATCATCTTTATTGATGAGATTGATTCTATTGCGCCCAAGAGAGAGAAGACTCACGGTGAAGTTGAGAGGAGGATTGTTTCACAACTTTTGACTCTTATGGATGGATTAAAATCTCGGTCTCATGTTATTGTTATTGGTGCTACAAATCGTCCAAACAGCATTGATCCAGCATTGAGGAGGTTTGGTAGATTTGATAGGGAAATTGATATTGGGGTTCCTGATGAAGTTGGGCGACTTGAAGTTCTTCGCATCCATACCAAAAACATGAAGCTCTCCGACGATGTTGATTTGGAGAAAATTGCAAAGGATACTCATGGGTATGTTGGTTCTGACCTTGCGGCTCTTTGCACTGAAGCTGCTCTGCAATGCATTAGGGAGAAGATGGATGTCATTGACTTGGAAGATGAGACCATTGATGCTGAAGTACTGAACTCTATGGCAGTTTCAAATGAGCATTTCCAAACTGCTCTAGGAACAAGCAATCCATCAGCTCTACGTGAAACTGTTGTTGAGGTGCCTAATGTCAGTTGGGATGACATTGGAGGCCTTGAGAATGTCAAGCGCGAGCTGCAAGAGACTGTTCAATATCCTGTGGAGCACCCAGAAAAATTCGAGAAATTTGGCATGTCACCATCAAAGGGGGTCCTCTTCTATGGTCCTCCAGGATGTGGAAAGACTTTGTTGGCCAAGGCAATTGCCAATGAATGCCAAGCAAACTTCATCAGTGTGAAAGGTCCTGAATTGCTTACAATGTGGTTTGGTGAAAGTGAAGCCAATGTTCGAGAAATTTTTGACAAGGCTAGACAATCTGCTCCATGTGTCCTCTTCTTTGATGAGCTTGACTCCATTGCTACTCAGAGAGGAAGCAGTGTTGGGGATGCTGGTGGTGCTGCTGACAGAGTTCTTAATCAACTCCTGACTGAAATGGATGGCATGTCTGCAAAGAAGACAGTGTTCATTATTGGGGCAACGAACAGACCTGATATCATTGACCCCGCACTCCTTCGGCCGGGTCGCCTTGATCAATTGATATATATTCCTCTTCCTGATGAGGACTCCCGTCATCAAATCTTCAAGGCCTGCTTGAGGAAGTCACCTGTCTCAAAAGATGTTGATCTGAGAGCACTAGCTAAGTATACACAGGGTTTCAGTGGGGCTGATATTACAGAAATATGCCAGAGAGCATGCAAATATGCTATAAGAGAAAACATAGAAAAGGATATAGAGCGAGAGAGGAGAAGAAGTGAGAACCCCGAGGCCATGGACGAAGACATTGACGAAGAAGTTGCAGAGATTAAGGCTGCACATTTTGAAGAGTCTATGAAGTTTGCCCGTAGGAGTGTTAGTGATGCTGACATTCGTAAATATCAGGCATTTGCTCAAACCTTACAGCAATCCAGGGGTTTTGGAAGTGAATTCAGGTTTTCAGAGACTGGAACGAGGGCTGCTGGAAATGAACCCTTTGCCACTTCTGCTGCTGCAGCCGATGATGATGATTTGTATAGTTAA 2499 0.4494 MVLFSLQALHSLPSSPKSSVLCSSIRSMSHPAESSDSKSGKKDFSTAILERKKSPNRLVVDEAVNDDNSVVSMHPETMEKLQLFRGDTILIKGKKRKDTICIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPVKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRSHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLEKIAKDTHGYVGSDLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVSNEHFQTALGTSNPSALRETVVEVPNVSWDDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSENPEAMDEDIDEEVAEIKAAHFEESMKFARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFSETGTRAAGNEPFATSAAAADDDDLYS 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g1270 832 SMART AAA_5 541 680 IPR003593 -
Lele31g1270 832 SMART AAA_5 268 404 IPR003593 -
Lele31g1270 832 SMART CDC48_2_2 157 223 IPR004201 -
Lele31g1270 832 TIGRFAM CDC48: AAA family ATPase, CDC48 subfamily 58 794 IPR005938 GO:0016787
Lele31g1270 832 Pfam Cell division protein 48 (CDC48), N-terminal domain 57 138 IPR003338 -
Lele31g1270 832 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 503 791 IPR027417 -
Lele31g1270 832 SMART CDC48_N_2 57 140 IPR003338 -
Lele31g1270 832 FunFam Cell division control 48 140 236 - -
Lele31g1270 832 Gene3D - 237 401 IPR027417 -
Lele31g1270 832 Pfam AAA+ lid domain 424 466 IPR041569 -
Lele31g1270 832 Pfam AAA+ lid domain 700 740 IPR041569 -
Lele31g1270 832 SUPERFAMILY ADC-like 53 137 IPR009010 -
Lele31g1270 832 Pfam Cell division protein 48 (CDC48), domain 2 159 222 IPR004201 -
Lele31g1270 832 FunFam Cell division control 48 403 494 - -
Lele31g1270 832 ProSitePatterns AAA-protein family signature. 648 666 IPR003960 GO:0005524|GO:0016887
Lele31g1270 832 FunFam Transitional endoplasmic reticulum ATPase 495 678 - -
Lele31g1270 832 Gene3D - 403 494 - -
Lele31g1270 832 FunFam Transitional endoplasmic reticulum ATPase 34 139 - -
Lele31g1270 832 PANTHER AAA-FAMILY ATPASE 434 796 - -
Lele31g1270 832 SUPERFAMILY Cdc48 domain 2-like 139 231 IPR029067 -
Lele31g1270 832 ProSitePatterns AAA-protein family signature. 372 390 IPR003960 GO:0005524|GO:0016887
Lele31g1270 832 Gene3D - 140 236 - -
Lele31g1270 832 Gene3D - 34 139 - -
Lele31g1270 832 MobiDBLite consensus disorder prediction 810 832 - -
Lele31g1270 832 Gene3D - 682 790 - -
Lele31g1270 832 FunFam Transitional endoplasmic reticulum ATPase 233 401 - -
Lele31g1270 832 Gene3D - 495 678 IPR027417 -
Lele31g1270 832 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 231 493 IPR027417 -
Lele31g1270 832 Pfam ATPase family associated with various cellular activities (AAA) 272 401 IPR003959 GO:0005524|GO:0016887
Lele31g1270 832 Pfam ATPase family associated with various cellular activities (AAA) 545 678 IPR003959 GO:0005524|GO:0016887
Lele31g1270 832 CDD AAA 238 401 - -
Lele31g1270 832 CDD AAA 511 678 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g1270 Lele-ChrLele31 18880374 18884551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g1270 474 737 Calmodulin-binding Proteins AT3G56690 48.106 6.81e-80 276