Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g1260 ATGGGAAGAGCTCCTTGTTGCGACAAAGCAAATGTGAAGAAGGGGCCATGGTCGCCAGAAGAAGACACGAAGCTGAAAGAGTACATAGAGAAGAACGGGACAGGAGGTAATTGGATCGCTCTTCCTCAGAAAGCAGGTCTAAAAAGGTGTGGGAAAAGTTGCAGATTGAGGTGGCTCAACTATCTGAGGCCCAACATTAAGCATGGAGAATTCTCCGATGAGGAAGACAGAATCATATGCACCCTCTATGCTAATATTGGAAGCAGGTGGTCAATTATAGCAGCTCAGTTGCCAGGCAGGACAGACAATGATATTAAGAACTACTGGAACACCAAGCTGAAGAAGAAGCTCATGGGTTTGCTTCCTCCATCATCTAATCATCAGATTCAGATCAGGAAACCTCCAACATTATTTCAAACCTCTCATCATCATCATGATCATCAAAGCCCACCATTATTTAGTTGTCAATCATCATACAGAGACTTTAGCTCTAATTATTACCCTAGCCCATCATCAACCATATCCTTCACCGGCCTTGAGTCCACTACTTCTGTTATTATGCCTTCAACTTATAACAACACCACAACTTCATCATCGCCAACCACCAATTTTCCTTATTTTCAGAACCAAGAGGCCTCCTTGGTTGATGGTGGTGGTCCAATGCAATACTACTACATGTTTGGAAGTGAAGGAAGTTGCAGCACTTCATCTGATGGAAGTTGCAGTCAAATCAGCCATGGAAGAGGAGGAGACGCCAAACAAGTAGAAGAAATGGGTTTTCATCAATTCCATCGCAACTACATGTCCAATGGTGGTGGTGGTGGGTTTGATAAGTTCATGCCCGGAGGTGAAAGTAGTATTAACCAGTGGACGACGACAGAGAAGCCAAGTGGGTACTTTGGGCAAACCTCATTAATGGATTATGGAATTGACGAGATAAAGCAGATGATCAGTGGTAATAATAATAATACTGAGGAAAACAAGAGAGAGGAAGAGAAGGGGATGATGTACTACTACTACTGA 1023 0.4321 MGRAPCCDKANVKKGPWSPEEDTKLKEYIEKNGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFSDEEDRIICTLYANIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMGLLPPSSNHQIQIRKPPTLFQTSHHHHDHQSPPLFSCQSSYRDFSSNYYPSPSSTISFTGLESTTSVIMPSTYNNTTTSSSPTTNFPYFQNQEASLVDGGGPMQYYYMFGSEGSCSTSSDGSCSQISHGRGGDAKQVEEMGFHQFHRNYMSNGGGGGFDKFMPGGESSINQWTTTEKPSGYFGQTSLMDYGIDEIKQMISGNNNNTEENKREEEKGMMYYYY 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g1260 340 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Lele31g1260 340 PANTHER OS09G0431300 PROTEIN 1 274 - -
Lele31g1260 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Lele31g1260 340 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Lele31g1260 340 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Lele31g1260 340 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Lele31g1260 340 CDD SANT 16 62 IPR001005 -
Lele31g1260 340 SMART sant 13 64 IPR001005 -
Lele31g1260 340 SMART sant 67 115 IPR001005 -
Lele31g1260 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Lele31g1260 340 Gene3D - 7 68 - -
Lele31g1260 340 FunFam Transcription factor RAX3 7 68 - -
Lele31g1260 340 Gene3D - 70 147 - -
Lele31g1260 340 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Lele31g1260 340 CDD SANT 70 111 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g1260 Lele-ChrLele31 18815771 18817365 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g1260 1 119 MYB Transcription Factor Family AT5G57620 89.916 2.42e-77 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele31g1260 Myb_DNA-binding 8.7e-14 CL0123