Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g1246 ATGTCCATATCAGACGTCGTGCACGGTTTCCTGTTATCTGCTGCACTGCTTCTTTCCTTAACTGGGATGATGATAAACTCGAGCTTATCCCCTATTACGTGTTGCCCCATCAGTTCGGCCTCCTCTTTAACTCATGGATATCCCTGTCTCTCTCCCCGTCTTTCCCTCTCCCCTTCACATATAAATTATCATCCTTCATTCCCTTTCTCTCTCCCTTATCCATCAAATCATCATCTATCATGGAATCCCACTTGCTCCTTCCTTCCTTCTCCCAATCCTCTCAATTCCCTGTTCACCATTTCGGGTCTGCTTCCTCTCTCTCTCTCTCTCTCATGCTCTGATTCCCTATTTCTCTCTCTAACTAATTTTTCTCCTCTTAGCTGCAAGCACTACAGAAGGGGCTGCAAGATCAGAACACCCTGTTGCGATGAGATTTTTGACTGTCGCCATTGCCATAATGAAGCTAAAAACTCCGAAGACATCAATTCCGTCGATTGTCACGATGTACCCCGCCACGACATTATAAAGGTCATCTGTTCCTCATGTGAAACAGAACAAGATGTTCAACAGTATTGCATCAACTGTGGAATCTGCATGGGGAAGTACTTTTGTGCTACTTGCAAATTCTTTGACGATGATATTTCGAAGAACCAATACCACTGTGATGAATGTGGCATCTGCAGAACTGGAGGCAAGGATAACTTTTTCCACTGTAAGAGATGTGGTTGTTGCTACTCCAATGTGATGAAAGAAGGACACCGATGTGTCGAACGAGCGATGCATCACAATTGCCCTGTTTGTATTGAGTATCTATTTGATACCTTGAGAGACATCACGGTCTTGCCTTGCGGCCATACTATACATTTGGAGTGCGTTAGAGAGATGGAGAAACATTGCAGGTATTCGTGCCCTGTTTGTTCGAAATCCATCTGTGACATGTCAAATCTGTGGAAGAAGATTGACCAAGTGATCGCTTCGACACCAATGCCTGAATCTTACAAAGAAAAGATGGTGTGGATACTGTGCAATGATTGTGGAGTGAACTCTCAAGTGCAGTTCCACGTTGTAGCTCACAAGTGTCAGAGTTGCAACTCATACAACACAAGACAGATACAGGGAAGCCCTACATCTGCATGCACTTCTTCGGTGGCTGAGATGGTGAGATGA 1167 0.4456 MSISDVVHGFLLSAALLLSLTGMMINSSLSPITCCPISSASSLTHGYPCLSPRLSLSPSHINYHPSFPFSLPYPSNHHLSWNPTCSFLPSPNPLNSLFTISGLLPLSLSLSCSDSLFLSLTNFSPLSCKHYRRGCKIRTPCCDEIFDCRHCHNEAKNSEDINSVDCHDVPRHDIIKVICSSCETEQDVQQYCINCGICMGKYFCATCKFFDDDISKNQYHCDECGICRTGGKDNFFHCKRCGCCYSNVMKEGHRCVERAMHHNCPVCIEYLFDTLRDITVLPCGHTIHLECVREMEKHCRYSCPVCSKSICDMSNLWKKIDQVIASTPMPESYKEKMVWILCNDCGVNSQVQFHVVAHKCQSCNSYNTRQIQGSPTSACTSSVAEMVR 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g1246 388 ProSiteProfiles Zinc finger CTCHY-type profile. 199 263 IPR017921 -
Lele31g1246 388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 336 IPR013083 -
Lele31g1246 388 SMART ring_2 264 306 IPR001841 -
Lele31g1246 388 SUPERFAMILY RING/U-box 263 312 - -
Lele31g1246 388 ProSiteProfiles Zinc finger CHY-type profile. 121 197 IPR008913 GO:0008270
Lele31g1246 388 Gene3D - 337 378 - -
Lele31g1246 388 Pfam CHY zinc finger 128 209 IPR008913 GO:0008270
Lele31g1246 388 SUPERFAMILY Zinc hairpin stack 200 257 IPR037275 -
Lele31g1246 388 SUPERFAMILY CHY zinc finger-like 125 198 IPR037274 GO:0008270
Lele31g1246 388 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 126 374 - -
Lele31g1246 388 FunFam RING finger and CHY zinc finger domain-containing protein 1 335 379 - -
Lele31g1246 388 Pfam Zinc-ribbon 311 369 IPR039512 -
Lele31g1246 388 ProSiteProfiles Zinc finger RING-type profile. 264 307 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g1246 Lele-ChrLele31 18726877 18729243 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g1246 127 372 C2H2 Transcription Factor Family AT3G18290 38.735 1.26e-51 184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0303 29 1796860 1802230 Lele31g1246 31 18726877 18729243 hybridization
Lele30g1112 30 14180971 14183470 Lele31g1246 31 18726877 18729243 hybridization