Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g1244 ATGGACATGGAAGCCGCAGACCACCTTGTGGGGTCATCCACCGCCTCTGTTAACGTCGCCAAAGGGAAACGCACCAAACGCCATAGGCCTTTCTCCGCCACACTCACTCACTCCACCTCATCCTCTGCTTCTGCCGATGATTACGCCTCCTTTAATTCCTCCGCCTCCACAACTTTTGACGGCGCCGACGATGAAGAAGAAGACATGGCTAATTGCTTGATTCTCCTGGCTCAGAGCGGTGATGCTCCTCATAAGGGGCCCCCGACCACCAAGAATATCAGTGGCTTCTATGTTTACGAGTGCAAAACTTGTAACAAATCCTTCCCTTCCTTTCAAGCCTTGGGCGGACACAGAGCGAGCCACAAGAAGCCTAAGGTTGAGCCCCCACAACCACTCACTGCCTCGGCCACCTCTGCCGCACAAGTTGCGAGTTTTGAGTTTGAAGAAGCAGGGGAAGATCGGTTCAAGAGCACCTCTCAGATTTCCCTTCAATTAGCGAGCAACAAAGCTTCCCCTAGCAACAAGGCAAAAATTCACGAGTGTTCCATATGTGGGTCGGAGTTCACGTCCGGGCAAGCATTGGGCGGCCACATGAGGAGGCACAGAGCATCCGCCAACACCGCCCCCGTGGGAGTGAAGCCCAGGAATGTTCTCGAATTGGATCTTAATTTGCCGGCGCCGGAGGACGATCTCCGGGACTCCAAGTTTCAGTTCACACCCGGGCCGAAATCTCTGGTGCTGTCTGCCGCGGCTCTGGTGGACTGCCATTATTGA 774 0.5452 MDMEAADHLVGSSTASVNVAKGKRTKRHRPFSATLTHSTSSSASADDYASFNSSASTTFDGADDEEEDMANCLILLAQSGDAPHKGPPTTKNISGFYVYECKTCNKSFPSFQALGGHRASHKKPKVEPPQPLTASATSAAQVASFEFEEAGEDRFKSTSQISLQLASNKASPSNKAKIHECSICGSEFTSGQALGGHMRRHRASANTAPVGVKPRNVLELDLNLPAPEDDLRDSKFQFTPGPKSLVLSAAALVDCHY 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g1244 257 ProSiteProfiles Zinc finger C2H2 type domain profile. 179 206 IPR013087 -
Lele31g1244 257 SMART c2h2final6 179 201 IPR013087 -
Lele31g1244 257 SMART c2h2final6 99 121 IPR013087 -
Lele31g1244 257 MobiDBLite consensus disorder prediction 1 49 - -
Lele31g1244 257 ProSiteProfiles Zinc finger C2H2 type domain profile. 99 126 IPR013087 -
Lele31g1244 257 ProSitePatterns Zinc finger C2H2 type domain signature. 101 121 IPR013087 -
Lele31g1244 257 Pfam C2H2-type zinc finger 179 203 - -
Lele31g1244 257 Pfam C2H2-type zinc finger 98 124 - -
Lele31g1244 257 ProSitePatterns Zinc finger C2H2 type domain signature. 181 201 IPR013087 -
Lele31g1244 257 PANTHER ZINC FINGER PROTEIN ZAT5 47 238 - -
Lele31g1244 257 MobiDBLite consensus disorder prediction 32 49 - -
Lele31g1244 257 Gene3D Classic Zinc Finger 96 201 - -
Lele31g1244 257 SUPERFAMILY beta-beta-alpha zinc fingers 98 201 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g1244 Lele-ChrLele31 18716667 18717440 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g1244 19 257 C2H2 Transcription Factor Family AT2G28200 44.483 2.03e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele31g1244 zf-C2H2_6 1.6e-11 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g1125 09 20400650 20408186 Lele31g1244 31 18716667 18717440 CCT
Lele10g1094 10 22351578 22355246 Lele31g1244 31 18716667 18717440 CCT
Lele29g0305 29 1810672 1811445 Lele31g1244 31 18716667 18717440 hybridization
Lele30g1110 30 14167077 14167847 Lele31g1244 31 18716667 18717440 hybridization