Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g1239 ATGGCTATTGTTGGTGTGCACAATGTGTCAGTGCTTGACTCTTCTTTCCTTAGGGACTCTCATTCTCAATCATCGAGTAGGCGTGGAGATGGAGGCAGGGGAAGCACCAAGTTATCTTCACTTTCGCAACTATGGGAAGAGATTGAGGATGAGCATATTCAAGGATCTCATCATTATAAGCAAGAAGAGGAGTTAAACAATTCTAGTTGTGAAAACTCTTCTAATCTCGGAGATCTTGAGAGGGAAAGAGTAAGGAAAATTTTCAGAGAATGGATGAACAGTGGCGCTAGAGATGAAGAATCCAGCATTTCCATCAGAAATAACAGTCCCAGGGACGAGTGGCTTGGCGAAACAGAGCAAGAGAGGGTCAGAATTATAAGAGAGTGGGTTCAAATGAGTAGCCGGCAGCAGAACGGTGTTGCTTCTGGGGACAGTAGAGAAGAGCAATCTGCAGAAATTGAACGTGTACGTAATGGATTTGTTATGAATAAAAATGAAGGGCAGAGTGAGCAAACTCGCAGGGGGATTCGAAAATTATGTGGCAGACAGGTTTTGCTTGATATGTTAAACAAGGCTGAGAGAGAAAGGCAGAGAGAAGTTCAGGAATTGTTGGACCATAGGGCTGTATCTCATTTTCCCCATCGCAATCGCATTCAGGCATTGCTAAGAGGCAGGTTTCTGAGAAATGATAGAGTTGCTGATAAGAAAAGGACCACTTCTGTGTCGGACAGTGAATTAGGCTTATTGAGGCAAAAGCAGACTGTTTCAGGTTTAAGGGAAGGATTCTTCTATAGAAAGAACATTTCTGGTTGCAGTTTAGAAAGCAACAATTTACCCGATACCTCATCAAACAGTGATATCGATGAAGCCAGCAGCTCACAATGTTCCTCGAATGTACATTCCAAACTATCTGAGCCCAGTTATCCAGGAACTGATGTAACTCAGAGACCTACACTTAAGAAATTAGAATGGCAAGATTCTCCTGCTCACGTTGGCGCAGAGGAACCACAGGATTTGAAAATTGAATCAAGAGATTCACTACAGTTGTCAATCAATGTTGGGATCATAACAAGAGATGAATCTCCACAAAGTGTTTATGTGGCGTCAACCGAAGATTCGTCGTCTAAGGAACTTTCCCGACAATGTTTGACAATTGAAGATACAGAGCATTGCTCTGTGCATGTATTCAGTGAGGACCGTAACGAACAGTCTGATCATGGATATTATTCTGAGGGAAATATCACTGATGACGATAACTTGAATGAACCTGCTGCTCCGGAAAGAGAGCTGTCCATAGAATTTGGAAATGATGAAAGTTATATTCTTCCACTTGATGTTGAACAGAGAGATAACCCTGAGGGCAGTATGGATCTTAATCATCCAACTTCTACAGCAAACGAGAGGCCCCAACACATGTTGCAGAACGGAGATGGCGAAGACCCTCATGTTCAAGAAGCATCTGAATTGCGGCCACAAGATGATGGCGCTCAAGAACCGATTGAAAATTTCTCTGATCATGAGGGTGCTGCTACAGTTGGCGGAACTCATGTAATATATTTTTCTGACGACGACAATGAGCATAGTGGAGAACTTGGTGACCTGTTAAATAGGAGACGAGTTTCTAATCTCCTTAGCAGCAGTTTTCGAGAGAATCTGGATCAGTTGGTACGATCATACGTTGAAAGGCAGAACGAAGCTCAAATGGAGTGGGAGCTGCAAGAGGAAGAAGACAACCTGGAGCAGCATGCTATGGATCATCAGATTGGTGCTCAAGATGGTCCTTCTCACAGTCCCATTTACTTGCCATCATCACCAACTCAATCTTCTCGACCATTTTGGGACCAACAGTCACATAACGATCATTGGCCACAGAATGACACGAATAATCAACTCACAGGAATTGAGTGGGAGATTATTAATGGTTTGAGGATTGACATGTCTGCGTTACAGCAGAGGATGAATGAAATGCAGAGAATGCTGGAGGCCTGCATGGATATGCAGCTTGAGCTGCAACGCTCATTGAGACAAGAAGTTTCTGCAGCACTACTTAATTGCTCACATGATGTCTCAACCAGATTGCAAGATCATAATGATAACTCAAAGTGGGAATGTGTGAGGAAAGGACTCTGCTGTATATGCTGTGAGAGCAATATTGATTCTCTATTGTACAGATGTGGGCACATGTGTATGTGTTCAAAATGTGCGAATGAATTGTTGCAGGGTAAGAGAAAGTGTCCAATGTGTCAAGCACCAGTGGTGGAAGTTATACATGCTTATTCCATACTATAA 2289 0.429 MAIVGVHNVSVLDSSFLRDSHSQSSSRRGDGGRGSTKLSSLSQLWEEIEDEHIQGSHHYKQEEELNNSSCENSSNLGDLERERVRKIFREWMNSGARDEESSISIRNNSPRDEWLGETEQERVRIIREWVQMSSRQQNGVASGDSREEQSAEIERVRNGFVMNKNEGQSEQTRRGIRKLCGRQVLLDMLNKAERERQREVQELLDHRAVSHFPHRNRIQALLRGRFLRNDRVADKKRTTSVSDSELGLLRQKQTVSGLREGFFYRKNISGCSLESNNLPDTSSNSDIDEASSSQCSSNVHSKLSEPSYPGTDVTQRPTLKKLEWQDSPAHVGAEEPQDLKIESRDSLQLSINVGIITRDESPQSVYVASTEDSSSKELSRQCLTIEDTEHCSVHVFSEDRNEQSDHGYYSEGNITDDDNLNEPAAPERELSIEFGNDESYILPLDVEQRDNPEGSMDLNHPTSTANERPQHMLQNGDGEDPHVQEASELRPQDDGAQEPIENFSDHEGAATVGGTHVIYFSDDDNEHSGELGDLLNRRRVSNLLSSSFRENLDQLVRSYVERQNEAQMEWELQEEEDNLEQHAMDHQIGAQDGPSHSPIYLPSSPTQSSRPFWDQQSHNDHWPQNDTNNQLTGIEWEIINGLRIDMSALQQRMNEMQRMLEACMDMQLELQRSLRQEVSAALLNCSHDVSTRLQDHNDNSKWECVRKGLCCICCESNIDSLLYRCGHMCMCSKCANELLQGKRKCPMCQAPVVEVIHAYSIL 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g1239 762 Coils Coil 565 585 - -
Lele31g1239 762 MobiDBLite consensus disorder prediction 588 617 - -
Lele31g1239 762 MobiDBLite consensus disorder prediction 597 617 - -
Lele31g1239 762 Coils Coil 182 209 - -
Lele31g1239 762 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 762 - -
Lele31g1239 762 MobiDBLite consensus disorder prediction 481 501 - -
Lele31g1239 762 SUPERFAMILY RING/U-box 709 755 - -
Lele31g1239 762 MobiDBLite consensus disorder prediction 399 423 - -
Lele31g1239 762 Coils Coil 639 666 - -
Lele31g1239 762 MobiDBLite consensus disorder prediction 57 76 - -
Lele31g1239 762 MobiDBLite consensus disorder prediction 274 314 - -
Lele31g1239 762 MobiDBLite consensus disorder prediction 448 501 - -
Lele31g1239 762 MobiDBLite consensus disorder prediction 17 40 - -
Lele31g1239 762 CDD mRING-HC-C3HC5_NEU1 710 748 - -
Lele31g1239 762 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 693 760 IPR013083 -
Lele31g1239 762 MobiDBLite consensus disorder prediction 455 471 - -
Lele31g1239 762 ProSiteProfiles Zinc finger RING-type profile. 710 749 IPR001841 -
Lele31g1239 762 Pfam Zinc finger, C3HC4 type (RING finger) 707 754 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g1239 Lele-ChrLele31 18681471 18684640 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g1239 710 756 C3H Transcription Factor Family AT3G06140 42.553 6.04e-07 50.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele12g0204 12 1639357 1642151 Lele31g1239 31 18681471 18684640 CCT
Lele10g1088 10 22279144 22281926 Lele31g1239 31 18681471 18684640 CCT
Lele29g0309 29 1839867 1845836 Lele31g1239 31 18681471 18684640 hybridization
Lele30g1105 30 14134544 14138537 Lele31g1239 31 18681471 18684640 hybridization