Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g1232 ATGGCGGAGGATCGGAACGGCGATAGCAATGAGGCAAGTGATTATAGTTCGGAGGACGAAGGGACCGAGGACTACAGACGAGGAGGTTATCACGCCGTTCAAATTGGCGACACTTTCAAAAATGGGTGCTATGTGGTCCAAAGCAAACTCGGCTGGGGTCATTTTTCCACTGTGTGGCTCGCTTGGGATACCCAGAAATCGCGTTATGTAGCCCTAAAAATTCAAAAGAGTGCCCAGCACTACACTGAAGCTGCAATGGATGAAATAAAGATTCTCAAACAGATTGCTGAAGGGGATCTGGATGACAAGAAATGTGTCGTCAAGCTTTTGGATCACTTTAAGCATTCAGGACCTAATGGCCAGCATGTGTGTATGGTTTTTGAATTCTTGGGTGACAATCTTCTGACCGTTATAAAGTATAGTGATTACCGAGGGATTCCTATCTCGATGGTTAAAGAAATTTGTTTCCATATTCTGGTGGGATTGGATTACTTGCATCGTGAGCTATCTATAATACACACAGATTTAAAACCAGAGAATGTCTTGCTTTTGTCAATGATAGATCCATCCAAAGATCCTAGAAAATCAGGTGCTCCACTTATCCTTCCAAACACCAGGGATAAGACCATTTCAAAAAATGGGGCCACAAAAGACAGTAATAGTTCAAAAGGAGATCTGACCAGGAACCAGAAAAAGAAATTGCGGAAAAAGGCTAAAAAGGCTGCTCAAAGTTGTGTTGAGGAGAGTCCCAAGGATGGTGAGGAGGATTCTAAAACACCTGAAGTAAAAGATTGTGGTTATGGTAATGATGTAAAACAGATTGTGGAATCTGTTGAAGATAAACCTAGTAGTCTTGTAGCCAAAGATGAATCAATGGAAGTTGTTGAAACCAAGGACATCCCAAATGGTAGTCATGGTCAACTGAGAGTTAGTCGTTCCATGAAAAAGAAGATGCTTGATGCTGTTGATCTTAAATGCAAGCTGGTTGATTTTGGAAATGCTTGTTGGACTTATAAACAATTCACGAATGATATTCAGACAAGGCAGTATAGATGTCCTGAGGTTCTTCTCGGATGCAAATATTCAACTGCAGCTGATTTATGGTCCTTTGCTTGCATTTGCTTTGAGCTTTGCGCAGGTGAGGTTCTTTTTGATCCCCGCAGTGGTGACAACTATTCAAGAGATGAGGATCATTTGGCATTGATGATGGAACTTCTTGGAACGATGCCTCGCAAGATTGCTCTAGGCGGTCGTTATTCTCGAGAGCTCTTTAATAGATATGGTGATTTAAGGCATATCCGCCGGTTACGTTTCTGGCCTCTTAATAAGGTGCTGACGGAGAAGTATGATTTTAGCGAGCCAGATGCGAATGACATGGCTGACTTCCTTGTTCCCTTACTCGATTTTGCCCCCGAAAAGAGGCCAACAGCTGCTCAGTGCCTTAATCATCCTTGGATCTCCGCAGGTCCTCGGACTCTTGAACCCTCAGTGACTGCTGTCCAATCTGAGGCCACAGACAAGGTAATGTCTGAAAAGATGAATGAGAAGGCTGAGTTGGAGGCAGTTGAAGTTGGTGTGCGGAATATAACCATTGATGGATCTCCAAAGGCACTCAAAGATTCACAGGCTACATAG 1635 0.4324 MAEDRNGDSNEASDYSSEDEGTEDYRRGGYHAVQIGDTFKNGCYVVQSKLGWGHFSTVWLAWDTQKSRYVALKIQKSAQHYTEAAMDEIKILKQIAEGDLDDKKCVVKLLDHFKHSGPNGQHVCMVFEFLGDNLLTVIKYSDYRGIPISMVKEICFHILVGLDYLHRELSIIHTDLKPENVLLLSMIDPSKDPRKSGAPLILPNTRDKTISKNGATKDSNSSKGDLTRNQKKKLRKKAKKAAQSCVEESPKDGEEDSKTPEVKDCGYGNDVKQIVESVEDKPSSLVAKDESMEVVETKDIPNGSHGQLRVSRSMKKKMLDAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGCKYSTAADLWSFACICFELCAGEVLFDPRSGDNYSRDEDHLALMMELLGTMPRKIALGGRYSRELFNRYGDLRHIRRLRFWPLNKVLTEKYDFSEPDANDMADFLVPLLDFAPEKRPTAAQCLNHPWISAGPRTLEPSVTAVQSEATDKVMSEKMNEKAELEAVEVGVRNITIDGSPKALKDSQAT 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g1232 544 MobiDBLite consensus disorder prediction 194 265 - -
Lele31g1232 544 SUPERFAMILY Protein kinase-like (PK-like) 39 496 IPR011009 -
Lele31g1232 544 Gene3D Transferase(Phosphotransferase) domain 1 127 487 - -
Lele31g1232 544 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Lele31g1232 544 Pfam Protein kinase domain 323 486 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele31g1232 544 Pfam Protein kinase domain 44 183 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele31g1232 544 ProSiteProfiles Protein kinase domain profile. 44 486 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele31g1232 544 MobiDBLite consensus disorder prediction 240 265 - -
Lele31g1232 544 MobiDBLite consensus disorder prediction 206 223 - -
Lele31g1232 544 MobiDBLite consensus disorder prediction 1 26 - -
Lele31g1232 544 SMART serkin_6 44 486 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele31g1232 544 ProSitePatterns Protein kinases ATP-binding region signature. 50 73 IPR017441 GO:0005524
Lele31g1232 544 FunFam Serine/threonine-protein kinase SRPK-like protein 316 486 - -
Lele31g1232 544 CDD STKc_SRPK 33 486 - -
Lele31g1232 544 FunFam CMGC/SRPK protein kinase 30 129 - -
Lele31g1232 544 Gene3D Phosphorylase Kinase; domain 1 20 126 - -
Lele31g1232 544 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 10 505 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g1232 Lele-ChrLele31 18625617 18628947 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g1232 1 536 EF-hand Containing Proteins AT5G22840 66.605 0.0 717
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Lele31g1232 Pkinase 9.6e-21 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g1108 11 18353208 18365751 Lele31g1232 31 18625617 18628947 CCT
Lele12g0212 12 1747038 1759260 Lele31g1232 31 18625617 18628947 CCT
Lele09g1108 09 20258469 20260839 Lele31g1232 31 18625617 18628947 CCT
Lele10g1076 10 22116462 22121405 Lele31g1232 31 18625617 18628947 CCT
Lele29g0314 29 1897110 1900429 Lele31g1232 31 18625617 18628947 hybridization
Lele30g1094 30 14072131 14075434 Lele31g1232 31 18625617 18628947 hybridization