Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g1227 ATGGAGGCCCCTGTCGTCAGATCGAGGGGCCGGCCGAGGAAACGGAGGAGAAAAGAGGATGAAAATGGAACGGATGATGGGAGATCGGTTCCCGATTTAAAAAGGCAAGCTGTTGGGACAAGAAGACCGGTAGCACTGGTTGGGCGATATATACTTAAAGAGTTTAAGGGTAATGGGGTCTTTCTGGGGAAAGTTGTGTATTACGAGTGTGGTTTATATAGAGTCAGTTACGAGGACGGTGATTATGAGGATTTAGATAGCAGCGAGATTCGTGGGATGCTTCTCAACGATTGTGATCTTGATGATGAGTTGACTAGAAGGAGGAATAAATTAGATCAACTGGTGTTGAAGTATAGTGCCAAGAGAACAGATGGCACCGAGAATAATTCTGCTGACTTAAACAAAGATGTCCTCGGGCTTGAGGCCCCTGCGTCAAGTGAATTGCCTGGTGGTTTATTGATTGAACAAGACGGGGTAGATACTGAGGAGGATGCTCATTCATCAAGTGACGAAAGAGATTCCGTGTCTGATGCAGAGATACCTTCTCTTCCTCCTCCACTGCAGTTGCCACCGTCTTCAGGGACTATTGGGGTGCCAGAGCCATATGTCTCTCATCTTCTTGCAGTCTACGGATTTTTACGGTCATTCAGCATTCGCCTGTTTTTAAGTCCGTTTTCTTTGGATGATTTTGTTGGTTCTCTTAACTGCCAAGTTCCAAATACTTTGTTTGATTCCATTCATGTTTCCCTGATGCGTGCATTGAGGCGTCACCTTGAAACTCTTTCATCTGAGGGCTCAGAGCATGCCTCAAAATGCTTGAGGTGTAACGATTGGGGCTTGCTGGATGCATTGACTTGGCCTGTTTTTGTTATTCAATATCTAGCGATTTATGGATACACAAAAGGACCTGAGTGGAAAGGATTTTATGATGAGATTTTTAATGGTGAATATTATTTATTACCTGTAAGTAGGAAGTTGACCATACTGCAAATTCTTTGTGATGATGTTTTGGAGTTTGAGGAAATGAAAGCTGAAATGGGCATTCGTGAAGAATTAGAAGTTGGGATGGAGTATGAGGCTCAAGATATCCTTCCAGAAGGAAATTGGCCTAGATTCCATCCAAGAAATGCTAAAAATGCTTGCAAGGATAAAGAGGCTACAAAGCTTGTTCTAGAATCTAATGCTTTGAAGCCACCAGGTAGTTCTGTTATAGATTTCAGAGACACTAGAAGGTCTGAGGATGCTGATGTTGACAGAAATGGAGATGAATGCCGTCTCTGTGGCATGGATGGGACCTTGCTTTGTTGTGATGGATGTCCGTCTGCATATCACTCTAGGTGTATCGGAGTGATGAAAATGTTTATACCAGAAGGGCCATGGTATTGTCCAGAGTGCAAAATTAATATGAATGGGTTAAGCATTGCACGGGGAACATCACTTAGAGGGGCTGAATTATTTGGAATGGATCTATACGGACAACTCTTCATGGGTACTTGTGACCACTTACTGGTACTCACTGTCAACAGTGAACTTTGTCTCAGATATTACAACCAGAAGGACATTTCAAAAGTTCTCCAAGTGCTTTACGCTTCAGTAGACCATAGGCCCCTATATTATGGAATTTGTATGGCTGCTTTACATTATTGGAATATTCCAGAAAGTATCCTGCCTGTATCTGTTAGAACTGGAACATATGTTAACAATTCAAGTACAGAGGAAGATGCAAAGTTCTCTAGTTTATCAACCACTCCTTCGGGTGAAAAAGAGCATACAGCTGTTAGTTTAGTGAAGGCTGAATACCCTGTAACCAGTGGGATTGTTATTCATGGTAATTACATGGCTCCATCTGACTCATTGGTTACCACTACTAGAGAGGCCTTTGCTTTTGAAAGCAGCAATGACAATACAACTAGAGAGTGCTTTACCATGAATACTATATTTCCTAAGGAGACTAGAATGGAGTCTGTCATCTCTGGTGGTCCTGGGGGTCATCAGCGCAGTCTCTTTGATATGACCAACAGTCATGGACGTGCAAATGATAAGCAGTTACCTTTTACTCCATCCTTGCAACTTAAAGAAGGCAACCAAGCTAGCTCTGGAAAGGTTGAACATAATCCAACTAAGGATCTTGTATACATGGGTTTTTCTTTTAAGCCTCAGTCTTACATTAATCACTATACGCAAGGTGATTTTGCTGCATCTGCTGCTGCTAAGTTGGCTATTCTTTCTTCCGAGGATTCTAGGTCAGAGGGTCATGTTTCAGATAATTTTAGGAAATTTACAGCTGAAAGCGCTTCTTTGCAAGCAAAAGCATTCTCAATGACCGTTTCACGCTTCTTTTGGCCAAGTTCTGAAAAGAAGCTTGTGGAAGTTCCAAGAGAGAGGTGTGGCTGGTGCCTTTCTTGTAAAGCCTCAGCCTCAAGCAAGAGAGGTTGCATGCTAAATCATGCTGCCTTGAGTGCGACCAAAAGTGGCATAAAAGTTTTAAGCGGTCTTTCCACTGTAAGGAGTGGAGAGGGAATTCTTCCAAGCATTGCTACATATATCTTGTATTTGGAGGAAAGTTTACATGGTTTAATAGTTGGGCCTTTTCTAAATGCAAATTACAGAAAACAATGGCGTAAACGAGTTGAGCAGGCTAAATCATTTAAAGCTATAAAGCCTCCTTTGCTTGAACTTGAGGAAAACATTCGCATAATATCTTTTACCGGTGAGTGGATTAAGCTGATGGATGATTGGTTGGTTGAATCTTCTGTTATTCAAGGTGCTACAAGTTCTGTTGGAACAATACAGACACGTGCACCAAATGGAAGGCGCTACAAGAAACAATCAGCTATTGATGAAGTTACAGCTGATGTTTCTCATGAAAACAACTTTGACTGGTGGAATGGTGGTAAATCTATGAAAATATTATTTCTAAAAGCGGTTTTGCCAAAATCCGTGGTCAGAAAAGCAGCTCGCCAAGGTGGGCGGAAGAAAATTTCTGGTATTTCCTATGCTGATGGCTGCGAAATCCCTAAAAGAAGCAGACAGATAGTTTGGAGAGCTGCGGTACAAATGAGTAGGAATGCATCACAGCTTGCAGTTCAGGTCAGATACCTTGACTTTCATCTTAGATGGAGTGATCTGATTTGTCCTGAGCAAAATCTCCAGGATGGGAAGGGTCAAGAGACTGAATCTTCTGCATTCAGAAATGCTAATATCTGTGATAAGAAAGAAGTGGGGGGGAAACTTTTGTATGGACTTGTTTTTAGGAACCAAAAGCATCTTCCTTCTCGTATAATGAAAAACATTGTCGAAGTAGAGCAAGGTCAAGAAGGAAAGGAAAAGTATTGGTTTTCTGAAGCACGTGTTCCTTTATATTTGGTAAAAGAGTATGAAGAAGGTATAGATAAAATGGCATCTCATCAAGAGAGCTTGAAGTTGGAATCTCAGCTGCAAAGAAGGCGGTTGAAAGCTGCTTGCAAGGATATATTTTTTTACCTTACCTGCAAGAGAGACAACTGGGATATATTTTCATGTGCTGTATGTCAGATGGATGTTTTAGCTGGGAATGCTCTCAAGTGCAATGCATGTCAAGGTTATTGCCATGAGGGCTGTTCTATAAGTCCAACCTTCTCTACAAACAAGGAGGTTGAGTTCTTAACCACATGCAAGCGCTGTTATGCTAAATTACTAGCTCAAAAAAGGACCAGTGATGAATCTCCAACTAGTCCCTTAGTCTTGCAAGGACAAGAACATAGCTCTGTGACTGTTTTGAAGGGATCAAGACCTAATTGTTATGATCAAGCCTTGAAATCTGCCAGTATCAAGAATACTCGTCCTGACATGAAACAAGGCACTCCTGATTCCACTCTGGCAACAAAAAGCCGTCCTAGGAATTGTTCTTGGGGTATTATATGGAATAAGAAGAGTGGTGATGATACAGGCATTGATTTTAGGCTTAAAAACATTCTTCTAAAAGGAGGTTCAAGTGCAACTCAATTACAACCTGTCTGTCACTTGTGCCGTAAGCCATATCGGTCTGATCTGATGTATGTTTGCTGTGACACATGCAAAAATTGGTATCATGCTGATGCTCTTGAGCTAGAAGAGTCAAAAATTTTTGAAGTGTCAGGCTTCAAATGCTGCAAGTGTCGCAGGATCAAATCTCCACACTGTCCTTACTCTGATAAGAAGCCCAGGATGCAGGAGGGCACTAAGAAACACCGGAGACCTTCAAAGAAGGATAATTCTAGCACAGACAATTTTGGAGTTATTTTTGAACCAAAAGAGTGTGAGCCTGCTACCCCGAACTTTCCTATAGGAGATGATGGATTGAGACAAAATGACCCTCTGCTTTACTCTCTTTCAAGTGCCGAGCTGATAACAGACCCTAATGCAGAAGTGGATGTTAAGAGGAATGCTATCTCTTGTCCAGGGCTACGGAAACTACCAGTGAGAAGACATGTTAAGCATGAGGGGGATGGTGATGAATCCTTTGGAACTAAACTTTCACAGGTTGAAATTTTAACACAAAATGGAACAGGTAGTCTGTCAGCTGCAGGGAAGGCATCATCTCCTGTGGAATATGACCCTGCTGTTTGCCTAGATAATAATCTGCTGAATGGCTGTGGAAGTGAAAATTATGAATTCATGGACTTTGAACCCCATACCTACTTCTCTGTAACAGAATTGCTGCAGCTAGATGATAATCAGTTTGAGGGAGCTGATGGATCTGCGGACTTGTCTGGATACTTGGAAAATGTTTCCGCCACGAATATGGATGGCATTCCTGACGAATCTGGAGTTCTTAGTTTAGTTGATAAACCAGAACTTGCAGCTTGTTTACCAGGCAGCGGTCATCATTGTTACCAATGCTTGCAGATGGAACCAGCTCCTGATCTCTCTTGTGAGATTTGTGGGCTTTGGATTCACAGCGAATGTACACCCTGGGTTGAATCACCTTCAAGATTAGGAATCTCAAGCTGGAGGTGTGGTAGTTGTCGGGAATGGCAATAG 5001 0.4203 MEAPVVRSRGRPRKRRRKEDENGTDDGRSVPDLKRQAVGTRRPVALVGRYILKEFKGNGVFLGKVVYYECGLYRVSYEDGDYEDLDSSEIRGMLLNDCDLDDELTRRRNKLDQLVLKYSAKRTDGTENNSADLNKDVLGLEAPASSELPGGLLIEQDGVDTEEDAHSSSDERDSVSDAEIPSLPPPLQLPPSSGTIGVPEPYVSHLLAVYGFLRSFSIRLFLSPFSLDDFVGSLNCQVPNTLFDSIHVSLMRALRRHLETLSSEGSEHASKCLRCNDWGLLDALTWPVFVIQYLAIYGYTKGPEWKGFYDEIFNGEYYLLPVSRKLTILQILCDDVLEFEEMKAEMGIREELEVGMEYEAQDILPEGNWPRFHPRNAKNACKDKEATKLVLESNALKPPGSSVIDFRDTRRSEDADVDRNGDECRLCGMDGTLLCCDGCPSAYHSRCIGVMKMFIPEGPWYCPECKINMNGLSIARGTSLRGAELFGMDLYGQLFMGTCDHLLVLTVNSELCLRYYNQKDISKVLQVLYASVDHRPLYYGICMAALHYWNIPESILPVSVRTGTYVNNSSTEEDAKFSSLSTTPSGEKEHTAVSLVKAEYPVTSGIVIHGNYMAPSDSLVTTTREAFAFESSNDNTTRECFTMNTIFPKETRMESVISGGPGGHQRSLFDMTNSHGRANDKQLPFTPSLQLKEGNQASSGKVEHNPTKDLVYMGFSFKPQSYINHYTQGDFAASAAAKLAILSSEDSRSEGHVSDNFRKFTAESASLQAKAFSMTVSRFFWPSSEKKLVEVPRERCGWCLSCKASASSKRGCMLNHAALSATKSGIKVLSGLSTVRSGEGILPSIATYILYLEESLHGLIVGPFLNANYRKQWRKRVEQAKSFKAIKPPLLELEENIRIISFTGEWIKLMDDWLVESSVIQGATSSVGTIQTRAPNGRRYKKQSAIDEVTADVSHENNFDWWNGGKSMKILFLKAVLPKSVVRKAARQGGRKKISGISYADGCEIPKRSRQIVWRAAVQMSRNASQLAVQVRYLDFHLRWSDLICPEQNLQDGKGQETESSAFRNANICDKKEVGGKLLYGLVFRNQKHLPSRIMKNIVEVEQGQEGKEKYWFSEARVPLYLVKEYEEGIDKMASHQESLKLESQLQRRRLKAACKDIFFYLTCKRDNWDIFSCAVCQMDVLAGNALKCNACQGYCHEGCSISPTFSTNKEVEFLTTCKRCYAKLLAQKRTSDESPTSPLVLQGQEHSSVTVLKGSRPNCYDQALKSASIKNTRPDMKQGTPDSTLATKSRPRNCSWGIIWNKKSGDDTGIDFRLKNILLKGGSSATQLQPVCHLCRKPYRSDLMYVCCDTCKNWYHADALELEESKIFEVSGFKCCKCRRIKSPHCPYSDKKPRMQEGTKKHRRPSKKDNSSTDNFGVIFEPKECEPATPNFPIGDDGLRQNDPLLYSLSSAELITDPNAEVDVKRNAISCPGLRKLPVRRHVKHEGDGDESFGTKLSQVEILTQNGTGSLSAAGKASSPVEYDPAVCLDNNLLNGCGSENYEFMDFEPHTYFSVTELLQLDDNQFEGADGSADLSGYLENVSATNMDGIPDESGVLSLVDKPELAACLPGSGHHCYQCLQMEPAPDLSCEICGLWIHSECTPWVESPSRLGISSWRCGSCREWQ 1666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g1227 1666 Pfam DDT domain 203 257 IPR018501 -
Lele31g1227 1666 Pfam PHD-finger 424 466 IPR019787 -
Lele31g1227 1666 MobiDBLite consensus disorder prediction 1 35 - -
Lele31g1227 1666 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 408 481 IPR013083 -
Lele31g1227 1666 SMART PHD_3 1332 1380 IPR001965 -
Lele31g1227 1666 SMART PHD_3 1173 1222 IPR001965 -
Lele31g1227 1666 SMART PHD_3 1616 1663 IPR001965 -
Lele31g1227 1666 SMART PHD_3 423 466 IPR001965 -
Lele31g1227 1666 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1321 1397 IPR013083 -
Lele31g1227 1666 ProSiteProfiles Zinc finger PHD-type profile. 421 468 IPR019787 -
Lele31g1227 1666 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 304 350 IPR028942 -
Lele31g1227 1666 ProSitePatterns Zinc finger PHD-type signature. 424 465 IPR019786 -
Lele31g1227 1666 SUPERFAMILY FYVE/PHD zinc finger 396 467 IPR011011 -
Lele31g1227 1666 MobiDBLite consensus disorder prediction 159 177 - -
Lele31g1227 1666 ProSiteProfiles DDT domain profile. 200 260 IPR018501 -
Lele31g1227 1666 SUPERFAMILY FYVE/PHD zinc finger 1330 1386 IPR011011 -
Lele31g1227 1666 SMART testlast3 200 260 IPR018501 -
Lele31g1227 1666 CDD PHD_SF 1616 1662 - -
Lele31g1227 1666 MobiDBLite consensus disorder prediction 1390 1416 - -
Lele31g1227 1666 MobiDBLite consensus disorder prediction 1390 1411 - -
Lele31g1227 1666 MobiDBLite consensus disorder prediction 15 32 - -
Lele31g1227 1666 CDD PHD_SF 1332 1379 - -
Lele31g1227 1666 CDD PHD2_CHD_II 424 465 - -
Lele31g1227 1666 MobiDBLite consensus disorder prediction 159 193 - -
Lele31g1227 1666 PANTHER PHD FINGER FAMILY PROTEIN 42 1509 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g1227 Lele-ChrLele31 18596803 18603485 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g1227 290 630 EF-hand Containing Proteins AT5G22760 41.226 1.41e-70 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Lele31g1227 DDT 1.1e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0317 29 1914181 1920900 Lele31g1227 31 18596803 18603485 hybridization
Lele30g1088 30 14041948 14048628 Lele31g1227 31 18596803 18603485 hybridization