Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g1226 ATGAGGAATAATAAGGTTGCGGACCAACAATTATCTACTGTTCGATCCATCGTTGGCGTCGAATATACTGACATGGATATCATAAGAGCACTGCACTTGGCCAACAATGACGTCACCGCCGCCATTAACATTATTTTTGATTCACCCAAGTTCAGATTGAAAGAGAGGTTAGGTGTGGGCACTCAGAGGAATTCAAAAGTTTCGCATCGAAGTTCAAGCTCTGATGCTGGAACTGGAGGTGGAAGTGTAGTTGCCGCCTTGGTTTCCAACTCAGGTGATTTTACCGCCCAGGATGTGGGAGGGCATTCAAGTTCAGCTGATAGTGATTGGTGGTTCGTGGGTTGCGGGGAAATGGCGGGGCTTTCGACCAGTAAAGGGAGGAGTATGAATTCTGGCGATCAAGTATTGTTCAAATTTCCGCTGAAGACAGGGCCAACTACGCCGTCCCCAGGTAAGGGTTTTGGACGGGGACGGCAAGCAGCAGCAACTTGTTCGGAGATAGTGCGATTCTATACCAAAGAAACGGGAGAGATTGGTAGAATACCGAATGAATGGGCTAGGTGTCTCTTGCCCCTTGTACGGGATAAGAAAGTTAGGATTGAAGGGCATTGTAAATATGCTCCTAATAATTTGAGCATTATGGACACCATTCTTTTGTCAATCAGAGTATTCATCAATAGTTCAATGTTTCGTAAACATCACCAGGCTTCTCTTAAGGACGCCACAAATTCCACTGATGAATCAGTGTTTCATCCTCTTCCAACCTTGTTTAGGTTGCTAGGCTTGAGCCCTTTCAAAAAGGCAGAGTTCACTCCTGGTGACTTGTACTCAAAGAAGCGCCCTTTCAATGAAAAGGAGAACTCTTCTCTTCAGGCAACATTACTGCCCATCAAATCCAAGCATCCTTCTGGAAATGATAACGAGGTAGACAATGAGGATTCAATATCTGAAACCGATCTTGACAAGATTGTTGGCGTTGGAGCTTGCTCAGAGCTAGAGGAAATGGATCCCCCTGGTAGTCTTCAGTGTGAATTGCGGCCCTATCAAAAGCAAGCTCTTCATTGGATGATCCAGCTGGAGACGGGACGGCCCATAGATGAGGCAGCAACAACCCTTCATCCTTGTTGGGAAGCATATCACCTGGCAGACGAGAGGGAGCTGGTTATTTATTTGAATGTTTTTTCTGGTGAAGCTACAATAGAATTTCCAAGCACACTTCAGATGGCTAGAGGAGGAATTTTGGCAGATACTATGGGGCTTGGAAAGACCATTATGACCATAGCCCTCCTCCTTGCCGATTCAGGCACTGGTAGTTCATCATCAAGTAGTCAACTCATGGATCAGCCCTTATCTGAAAGTGGTGAAGTTAATGACACGGTGAGGAACTCTTCAAATGTACCTAAGAAGGCAAACAAGTTTTCTGGTTTTGATAAACTGAGGAAGCAAAGGAATACTCTAACAAATGGTGGCAGTCTGATAATATGTCCCATGACACTTCTAGGACAGTGGAAGGCAGAGATTGAAACTCATGTGCAGCCTGGATCTTTGTCTTTATATGTTCATTATGGACAGAGTCGACCAAAAGATGCAAGAACTCTGGCTCAGAGTGATGTTGTAATTACTACATATGGAATTGTAGCCTCTGAGTTTTCCAGTGAGAATGCAGAGGATAATGGTGGACTTTTCTCAATTCGATGGTCCAGGGTGGTTCTAGATGAGGCACATACTATAAAATCTTCCAAAAGCCAAATATCTATGGCTGCTTCAGCTTTAGTTGCTGACAGACGTTGGTGTCTTACTGGCACTCCTATACAGAACGACCTTGAGGATATTTACAGTCTTCTTCGATTTCTGAGAATAGAGCCTTGGGGTCATTGGGCCTGGTGGAACAAACTCGTTCAGAAACCATTTGAGGAGGGTGATGAGAGAGGGCTGAAGTTGGTTCAATCCATCTTGAAGCCAATCATGTTGAGGAGAACCAAACATAGTGTGGATCGGGACGGCAAGCCTATTATTGTTCTTCCTCCAGCTGAACTGCAGATAATTTACTGTGAACTCACTGAAGCTGAAAAGGACTTTTACGAGGCACTATTCAAAAGATCTAAGGTCAAGTTTGATCAGTTTGTTGAGCAAGGGCGTGTTCTTCATAATTATGCTTCCATATTGGAGCTGCTGTTACGTCTTCGACAATGCTGTGACCATCCATTTCTTGTAATGAGCCGAGGCGATACTCAAGAATATTCCGATCTAAACAAACTAGCTAAACGTTTCCTCAAAGGAAGCCATAATGCTTCAGAAGGGGAAGCAAAAGACGCACCTTCACGGGCTTATATCCAAGAAGTGGTGGAAGAACTACGTAAGGGGGAACAGGGAGAATGTCCAATATGTCTTGAAGCATTTGAAGATGAAGTATTGACCCCTTGTGCTCACCGCTTATGCCGGGAATGCCTCTTGGCTAGTTGGAGGAATTCTAATTCTGGCTTATGTCCTGTTTGTAGGAAAACAATAAGCAGGCAGGACCTTTTAACTGCCCCGAGGGAAAGTCGGTTTCAGATTGATATTGAGAAAAACTGGGTGGAGTCATGCAAGATAACTGCCCTTTTGTATGAACTTGAAAATCTTCGCTCATCAAGCTCTAAGAGCATTGTTTTCAGCCAGTGGACTGCTTTTCTAGACCTCTTGCAGATTCCCTTTACTAGGAATAACATTCCATTTGTACGTCTTGATGGGACTTTGAATCAGCAGCAGCGTGAAAAAGTACTTAGACAATTCTCAGAAGACAGCAATATCCTGGTGTTGTTGATGTCCCTCAAAGCTGGTGGAGTGGGTATAAATCTAACCGCAGCCTCAAATGCTTTTGTCATGGATCCATGGTGGAATCCAGCTGTGGAGGAGCAAGCTGTTATGCGAATCCATCGCATTGGACAAACAAAGAATGTGGCCATTAAACGGTTTATTGTGAAGGGGACAGTTGAGGAGAGAATGGAAGCAGTGCAAGCACGGAAACAGCGAATGATTTCCGGTGCCTTGACTGATCAAGAAGTTCGAACTGCACGAATTGAGGAGTTGAAGATGCTTTTTACTTAG 3087 0.4438 MRNNKVADQQLSTVRSIVGVEYTDMDIIRALHLANNDVTAAINIIFDSPKFRLKERLGVGTQRNSKVSHRSSSSDAGTGGGSVVAALVSNSGDFTAQDVGGHSSSADSDWWFVGCGEMAGLSTSKGRSMNSGDQVLFKFPLKTGPTTPSPGKGFGRGRQAAATCSEIVRFYTKETGEIGRIPNEWARCLLPLVRDKKVRIEGHCKYAPNNLSIMDTILLSIRVFINSSMFRKHHQASLKDATNSTDESVFHPLPTLFRLLGLSPFKKAEFTPGDLYSKKRPFNEKENSSLQATLLPIKSKHPSGNDNEVDNEDSISETDLDKIVGVGACSELEEMDPPGSLQCELRPYQKQALHWMIQLETGRPIDEAATTLHPCWEAYHLADERELVIYLNVFSGEATIEFPSTLQMARGGILADTMGLGKTIMTIALLLADSGTGSSSSSSQLMDQPLSESGEVNDTVRNSSNVPKKANKFSGFDKLRKQRNTLTNGGSLIICPMTLLGQWKAEIETHVQPGSLSLYVHYGQSRPKDARTLAQSDVVITTYGIVASEFSSENAEDNGGLFSIRWSRVVLDEAHTIKSSKSQISMAASALVADRRWCLTGTPIQNDLEDIYSLLRFLRIEPWGHWAWWNKLVQKPFEEGDERGLKLVQSILKPIMLRRTKHSVDRDGKPIIVLPPAELQIIYCELTEAEKDFYEALFKRSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLVMSRGDTQEYSDLNKLAKRFLKGSHNASEGEAKDAPSRAYIQEVVEELRKGEQGECPICLEAFEDEVLTPCAHRLCRECLLASWRNSNSGLCPVCRKTISRQDLLTAPRESRFQIDIEKNWVESCKITALLYELENLRSSSSKSIVFSQWTAFLDLLQIPFTRNNIPFVRLDGTLNQQQREKVLRQFSEDSNILVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKNVAIKRFIVKGTVEERMEAVQARKQRMISGALTDQEVRTARIEELKMLFT 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g1226 1028 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 788 844 IPR013083 -
Lele31g1226 1028 SMART ring_2 793 832 IPR001841 -
Lele31g1226 1028 MobiDBLite consensus disorder prediction 440 470 - -
Lele31g1226 1028 MobiDBLite consensus disorder prediction 60 79 - -
Lele31g1226 1028 Gene3D - 675 1028 IPR027417 -
Lele31g1226 1028 SMART ultradead3 341 640 IPR014001 -
Lele31g1226 1028 Pfam HIRAN domain 114 221 IPR014905 GO:0003676|GO:0008270|GO:0016818
Lele31g1226 1028 MobiDBLite consensus disorder prediction 293 313 - -
Lele31g1226 1028 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 332 659 IPR027417 -
Lele31g1226 1028 CDD SF2_C_SNF 859 986 - -
Lele31g1226 1028 CDD DEXDc_SHPRH-like 345 659 - -
Lele31g1226 1028 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 671 1017 IPR027417 -
Lele31g1226 1028 MobiDBLite consensus disorder prediction 440 471 - -
Lele31g1226 1028 SUPERFAMILY RING/U-box 780 839 - -
Lele31g1226 1028 SMART helicmild6 892 975 IPR001650 -
Lele31g1226 1028 Gene3D - 403 672 IPR038718 -
Lele31g1226 1028 ProSitePatterns Zinc finger RING-type signature. 808 817 IPR017907 -
Lele31g1226 1028 FunFam DNA repair protein RAD5B 400 660 - -
Lele31g1226 1028 ProSiteProfiles Zinc finger RING-type profile. 793 833 IPR001841 -
Lele31g1226 1028 Pfam Helicase conserved C-terminal domain 863 975 IPR001650 -
Lele31g1226 1028 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 403 621 IPR014001 -
Lele31g1226 1028 CDD RING-HC 793 832 - -
Lele31g1226 1028 Pfam SNF2-related domain 348 737 IPR000330 GO:0005524|GO:0140658
Lele31g1226 1028 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 102 1028 - -
Lele31g1226 1028 MobiDBLite consensus disorder prediction 61 79 - -
Lele31g1226 1028 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 863 1028 IPR001650 -
Lele31g1226 1028 Pfam Zinc finger, C3HC4 type (RING finger) 793 832 IPR018957 GO:0046872
Lele31g1226 1028 SMART HIRAN_2 113 225 IPR014905 GO:0003676|GO:0008270|GO:0016818
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g1226 Lele-ChrLele31 18582077 18591118 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g1226 5 1028 RAD5 or RAD16-like Gene Family AT5G22750 71.581 0.0 1510
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele31g1226 SNF2_N 2.1e-87 CL0023