Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g1225 ATGGAGGACAGTACGGTCACCCAGTCTTTGAACTCCCCGCAGGCCGAACAACACATGGCATGTACGGCCGACCTTAACGGCCCCTCTTTTGTTTCGGGAGCTGTTGGAGTCCAGAACTCCGCCGTCGGAGGAAATTCCGAGGCTAGCGGTTCGGAGGTTGGGTTGAAAAGGGGAAGGGGAAGGCCCCGGAAGTATGATGGAAACCTTCCGTCTCCAAAATCGACGCCATCGGGAGTTTCAACCTCTCCATCTTCTAAGAGAGGCAGAGGAAGGCCACGTGGCTCTGGAAAGTTGCAGATTTTAGCTTCAATGGGAGGAATGTTTTCAGCCACAGCTGGAGGAAGCTTCATCCCTCATGTAGTGATTGTGAATCCCGGAGAGGATGTTGTGAATAGCATCTCATCATTTTGTCATAAAGGCCCTCTTGCTCTTTGCATTCTCTCCGCTATTGGTGCTGTATCTGTTGTCGACATTCAGCAACCTGGTTCTTCTGGTCGTTGTTGTTTGAGACATGAGGGTCTCTTTGAGATAATAACTTTATCTGGATCATATACCTATGGTGGAATCAGTGGTGGTACATATCAGAAAAGTCTCACCATGAGAATATCACTAGCTCAACCCGATGGGAAGATTTTCGGAGGTAATGTTGGGGGATCACTGATAGCGGCTGGCCCTATTCAACTAATTCTGGGCAGTTTTAAGCAAAACATCAGTAGTGAAATTAAAAGGCGGCTGTCCCCTGGATCTTCTGATGCTGCTGCCGACACGCCTGGTGATTCAGATTCAGTGAGGCTTTCCTTACAAGTTCCTAAATTGATAGAATCTGAACAGAGTTTTCCTTCACCAACATCTGGACTTATGCCGACATCTAATGGATTTCCTGACAATGTCATGCCTAGAACATCTAATGGATTACCAAACAATGTCACTGCTACGAAAACCAATGGTAATGGATTACCAGATTTCTTTTCTCCGAATCAGAACGTGCACTCTACCTCGTTGAATGGTGCTAGCCTTGACTTTCAGGTGTTACAACCCTTCACAAATCCAATGACATTTGGAGATATTAATAATAATAATAGTGTCTCTCATATGTGA 1098 0.4599 MEDSTVTQSLNSPQAEQHMACTADLNGPSFVSGAVGVQNSAVGGNSEASGSEVGLKRGRGRPRKYDGNLPSPKSTPSGVSTSPSSKRGRGRPRGSGKLQILASMGGMFSATAGGSFIPHVVIVNPGEDVVNSISSFCHKGPLALCILSAIGAVSVVDIQQPGSSGRCCLRHEGLFEIITLSGSYTYGGISGGTYQKSLTMRISLAQPDGKIFGGNVGGSLIAAGPIQLILGSFKQNISSEIKRRLSPGSSDAAADTPGDSDSVRLSLQVPKLIESEQSFPSPTSGLMPTSNGFPDNVMPRTSNGLPNNVTATKTNGNGLPDFFSPNQNVHSTSLNGASLDFQVLQPFTNPMTFGDINNNNSVSHM 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g1225 365 MobiDBLite consensus disorder prediction 32 47 - -
Lele31g1225 365 CDD DUF296 118 233 IPR005175 -
Lele31g1225 365 MobiDBLite consensus disorder prediction 1 19 - -
Lele31g1225 365 SMART AT_hook_2 56 68 IPR017956 GO:0003677
Lele31g1225 365 SMART AT_hook_2 86 98 IPR017956 GO:0003677
Lele31g1225 365 Pfam Plants and Prokaryotes Conserved (PCC) domain 118 234 IPR005175 -
Lele31g1225 365 SUPERFAMILY AF0104/ALDC/Ptd012-like 115 236 - -
Lele31g1225 365 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 35 289 IPR039605 GO:0003680
Lele31g1225 365 MobiDBLite consensus disorder prediction 1 96 - -
Lele31g1225 365 MobiDBLite consensus disorder prediction 70 88 - -
Lele31g1225 365 Gene3D - 118 249 - -
Lele31g1225 365 PRINTS AT-hook-like domain signature 84 95 IPR017956 GO:0003677
Lele31g1225 365 PRINTS AT-hook-like domain signature 56 66 IPR017956 GO:0003677
Lele31g1225 365 ProSiteProfiles PPC domain profile profile. 113 258 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g1225 Lele-ChrLele31 18577082 18579707 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g1225 52 244 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 47.475 4.01e-42 149