Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g1189 ATGAGTCTGAGAGATCAGTACTACAATGTACAAGATAAGAATAATCCTTACTTTCAATATGCTTCTCCAACTTTCATAGAATGGCTCAAGCCATCATCATCTTCTTCTTCTTCTTCTGATGAGATTTGTTATCAAAACGAGGTCGTTCGGGAGACTATCCAGTTTCTGCCTCCATCGAGAGACTTGGAAGTGGAAAAGGAGGCCGTGTTTGGATCAGTGAAAGAAGAGAAGGTATTGTTAGAGCAAGTTGGGGTGGCTTTGCACATTGGGTTGCCTACTAATTACACAGAAGACAGTGATCATGGTGGGGCTGATATGAAGAAGAAGGTTACTGATCATGTTAAAGAAGAAGACGAAGAAGAAGAAGAAGAAGACATGATGATGAGGACGACGATGAAGAGAAGCTTCCATGGATTTAACCAAGAGAGAAGGTTCTGGATACCAACTCCTGCACAGATCCTAATTGGGCCGATGCAGTTTGCTTGCTCCATATGCAGCAAAACCTTCAATAGGTATAACAATATGCAGATGCATATGTGGGGACATGGGTCTGAATTTAGGAAAGGACCAGATTCACTTAGAGGAACACAACCAGCAGCAATGTTGAGGCTACCATGTTATTGTTGTGCTCATGGCTGCAAGAACAACATCAACCACCCAAGAGCCAAGCCACTGAAGGACTTCAGAACCCTGCAGACCCATTACAAGAGAAAGCATGGCTCAAAACCCTTCATGTGCAGAAAATGTGTCAAGACTTTCGCTGTCAAAGGGGATTGGAGGACTCACGAGAAGAACTGTGGGAAGCTTTGGTATTGCACTTGTGGTTCAGATTTCAAGCACAAAAGGTCCCTTAAGGATCATATTAGGTCGTTCGGAAAGGGACACAAACCCCATCCTTCTCTTGAAGGTTTTGAGAAGGACTCCGAAGAAGATGAAGCTACTATTACTACTCACACATGA 960 0.4344 MSLRDQYYNVQDKNNPYFQYASPTFIEWLKPSSSSSSSSDEICYQNEVVRETIQFLPPSRDLEVEKEAVFGSVKEEKVLLEQVGVALHIGLPTNYTEDSDHGGADMKKKVTDHVKEEDEEEEEEDMMMRTTMKRSFHGFNQERRFWIPTPAQILIGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLRGTQPAAMLRLPCYCCAHGCKNNINHPRAKPLKDFRTLQTHYKRKHGSKPFMCRKCVKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHKPHPSLEGFEKDSEEDEATITTHT 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g1189 319 Gene3D Classic Zinc Finger 203 291 - -
Lele31g1189 319 Gene3D Classic Zinc Finger 159 182 - -
Lele31g1189 319 ProSiteProfiles Zinc finger C2H2 type domain profile. 264 297 IPR013087 -
Lele31g1189 319 MobiDBLite consensus disorder prediction 289 319 - -
Lele31g1189 319 FunFam Zinc finger protein WIP2 213 295 - -
Lele31g1189 319 PANTHER ZINC FINGER PROTEIN WIP2 30 312 IPR043584 GO:0003700|GO:0010468
Lele31g1189 319 ProSitePatterns Zinc finger C2H2 type domain signature. 162 182 IPR013087 -
Lele31g1189 319 SUPERFAMILY beta-beta-alpha zinc fingers 151 183 IPR036236 -
Lele31g1189 319 SUPERFAMILY beta-beta-alpha zinc fingers 230 264 IPR036236 -
Lele31g1189 319 MobiDBLite consensus disorder prediction 96 126 - -
Lele31g1189 319 MobiDBLite consensus disorder prediction 100 115 - -
Lele31g1189 319 ProSiteProfiles Zinc finger C2H2 type domain profile. 160 187 IPR013087 -
Lele31g1189 319 SMART c2h2final6 207 239 IPR013087 -
Lele31g1189 319 SMART c2h2final6 160 182 IPR013087 -
Lele31g1189 319 SMART c2h2final6 244 264 IPR013087 -
Lele31g1189 319 MobiDBLite consensus disorder prediction 293 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g1189 Lele-ChrLele31 18331239 18334125 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g1189 18 309 C2H2 Transcription Factor Family AT1G08290 57.658 1.30e-122 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele31g1189 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g1070 11 17950104 17954235 Lele31g1189 31 18331239 18334125 CCT
Lele12g0245 12 2163328 2167282 Lele31g1189 31 18331239 18334125 CCT
Lele09g1068 09 19889449 19895931 Lele31g1189 31 18331239 18334125 CCT
Lele29g0351 29 2151639 2154472 Lele31g1189 31 18331239 18334125 hybridization
Lele30g1056 30 13830253 13833099 Lele31g1189 31 18331239 18334125 hybridization