Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g1186 ATGGCGAGTCACAGAATAGGACAGGCTGGTTTGTCTGAGTCATCACCTTCAGGTCATCACTATGGAGTACTTCACGGAATTAATAATACTCCGGCCGCAGCATCCACCTTAATCAATCAAGGGTCTGCTTTTGATTTTGGAGAGCTGGAAGAAGCAATAGTTCTGCAAGGAGTAGAGATTAGAAATTATGAAGGCAGAGCACCTTTATTCACATCCAGGCCTGCAGCTACTACTCTGGAAATGTTCCCATCTTGGCCAATCAGATTTCAGCAAACCCATAGAGTAGTAGGAGGATCAAAGTCAGGAGGAGAAAGCACGGATTCAGGATCAGGTGTTAATACTGTATCAAGCAAAAGTGAGCTTCAGTTTGATTTTGAACCAGAATCTCCCATTAGTAATAAGAAAGCGTCTTCTTCTTCAGAGCTTCATCATCATCATCAGAAACTTCAACAACAGGAGATGGCAAGTGATGCTTCAAGAACAGGCCCATCAAAGACACAGAATCAATCACCTGCAAAATCGTCTCAGGAAAAGAGGAAGGGAGCTGGTTCTTCATCGGAGAAACCACTTGATGCAAAGACACTGAGACGTCTAGCTCAAAATAGAGAAGCTGCTCGGAAGAGCCGTTTGAGGAAAAAGGCTTACGTGCAGCAGCTAGAGACCAGTAGTATAAAGCTTACCCAGCTTGAACAAGACCTTCAAAGAGCCCGATCTCAGGGACTGTTCTTAGGCTGTGCTGGTGCCGGAGGCAACATAAGCTCTGGATCTGCAATATTTGACATGGAATATGCAAGATGGTTAGAGGAAGACCACCGGCACATGACGGAGTTGCGGGCGGCGCTTCAGGCGGCGTTATCGGACAGCGAGTTAAGAATAATGGTGGACGGATATCTGTTGCATTACGATGAGATCTTCAGGCTGAAAGGAGTCGCTGCAAAATCAGACGTGTTTCATCTTATTACTGGCATGTGGACTTCTCCTGCTGAACGCTGCTTCCTTTGGATGGGTGGTTTCAGACCCTCTGAACTCATCACGATGTTGATACAGCAGTTAGAGCCGTTGGCTGAGCAGCAGATTATGGGATTGTATGGCCTCAGACATTCATCACAGCAAGCAGAAGAGGCTCTCTCTCAAGGCCATGAGCAACTCCAGCAGTCCCTCGTCAACACCATCGCCGGCGGCACCGTCGGCGACGGCGTGCAACAGATGGTCATCGCCATGAGCAAGCTCTCCAATCTTGAAGGATTCGTCCGCCAGGCGGATAACTTGAGGCAACAGACACTGCAACAGTTATGTAGATTGTTGACAGTTCGGCAAGCAGCGAGATGCTTCCTTGTAATGGGAGAGTATTATGGTCGCCTTCGTGCTCTTAGTTCTCTCTGGGCTTCAAGACCTCGAGAGACGATGATGAACGACGATAGCTCATGTCAAACGACGACGACGGAATTGCAAATGGTGCATCCGAATCATTTTGGCGGATTCTGA 1485 0.4781 MASHRIGQAGLSESSPSGHHYGVLHGINNTPAAASTLINQGSAFDFGELEEAIVLQGVEIRNYEGRAPLFTSRPAATTLEMFPSWPIRFQQTHRVVGGSKSGGESTDSGSGVNTVSSKSELQFDFEPESPISNKKASSSSELHHHHQKLQQQEMASDASRTGPSKTQNQSPAKSSQEKRKGAGSSSEKPLDAKTLRRLAQNREAARKSRLRKKAYVQQLETSSIKLTQLEQDLQRARSQGLFLGCAGAGGNISSGSAIFDMEYARWLEEDHRHMTELRAALQAALSDSELRIMVDGYLLHYDEIFRLKGVAAKSDVFHLITGMWTSPAERCFLWMGGFRPSELITMLIQQLEPLAEQQIMGLYGLRHSSQQAEEALSQGHEQLQQSLVNTIAGGTVGDGVQQMVIAMSKLSNLEGFVRQADNLRQQTLQQLCRLLTVRQAARCFLVMGEYYGRLRALSSLWASRPRETMMNDDSSCQTTTTELQMVHPNHFGGF 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g1186 494 ProSiteProfiles DOG1 domain profile. 256 464 IPR025422 GO:0006351|GO:0043565
Lele31g1186 494 Gene3D - 192 241 - -
Lele31g1186 494 CDD bZIP_HBP1b-like 193 244 - -
Lele31g1186 494 Coils Coil 219 239 - -
Lele31g1186 494 SMART brlzneu 189 265 IPR004827 GO:0003700|GO:0006355
Lele31g1186 494 MobiDBLite consensus disorder prediction 95 123 - -
Lele31g1186 494 Pfam bZIP transcription factor 192 234 IPR004827 GO:0003700|GO:0006355
Lele31g1186 494 FunFam BZIP family transcription factor 192 241 - -
Lele31g1186 494 MobiDBLite consensus disorder prediction 152 179 - -
Lele31g1186 494 MobiDBLite consensus disorder prediction 95 195 - -
Lele31g1186 494 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 196 211 IPR004827 GO:0003700|GO:0006355
Lele31g1186 494 PANTHER TRANSCRIPTION FACTOR TGA9 138 467 - -
Lele31g1186 494 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 191 235 IPR004827 GO:0003700|GO:0006355
Lele31g1186 494 Pfam Seed dormancy control 273 348 IPR025422 GO:0006351|GO:0043565
Lele31g1186 494 SUPERFAMILY Leucine zipper domain 193 236 IPR046347 GO:0003700|GO:0006355
Lele31g1186 494 MobiDBLite consensus disorder prediction 180 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g1186 Lele-ChrLele31 18299795 18305858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g1186 145 494 bZIP Transcription Factor Family AT1G08320 68.820 1.92e-177 500
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Lele31g1186 DOG1 1.1e-30 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele31g1186 31 18299795 18305858 Lele09g1056 09 19811884 19812342 CCT
Lele31g1186 31 18299795 18305858 Lele10g1020 10 21603517 21604706 CCT
Lele31g1186 31 18299795 18305858 Lele12g0260 12 2250237 2250788 CCT
Lele29g0353 29 2180761 2186817 Lele31g1186 31 18299795 18305858 hybridization
Lele30g1051 30 13794517 13796815 Lele31g1186 31 18299795 18305858 hybridization