Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g1175 ATGGAGATCGGATGGCCGACTAACGTGCGCCATGTTGCGCACGTCACATTTGATAGGTTCAATGGGTTCTTGGGTTTGCCGGACGAATTCGAACCTGAAGTGCCCAGAAGGCCTCCCAGTGCTAGTGCAACTGTTTTTGGAGTTTCCACAGAATCCATGCAGTTATCGTTTGACTCCAGAGGGAACAGTGTGCCAACTATTCTGTTATTAATGCAAAGACGCCTGTATAGTGAAGGAGGTTTGCAGGCAGAGGGAATATTCAGAATTAATGCAGACAATAGTCAAGAGGAACATGTTAGGGAGCAATTAAACAGGGGAGTAGTCCCTGAAAGCATTGATGTACATTGCTTAGCAGGACTTATCAAGGCTTGGTTTAGGGAACTGCCAATAGGCGTTCTGGATTCCTTATCACCTGAGCAGGTAATGAAAAGCCAAACTGATGAGGAGTGTGCTGAACTAGCAAGGAATCTACCTCCCACTGAAGCTGCCCTCTTTGACTGGGCAATCAATCTCATGGCTGACGTTGTCCAATATGAACATCTTAATAAGATGAATGCACGCAACGTTGCCATGGTTTTTGCCCCAAACATGACTCAGATGGCCGACCCTTTGACTGCATTAATGTATGCAGTTCAAGTGATGAACTTCTTGAAGACACTGATACTAAGGACACTGCGGGAAAGAAAGGATTCTATAGTAGAATCTTCTCCTGGTTTTTATTTAGAGCCCTCTGATGATAATAGTCACAATAGCCCTATACAGTTCTGCCAGCCAGATTCTTCTAAAGATAATGAAGAGGCTCAGGCCCTCACAAATGAAAAAACTGTCTCAGAAACTGACCCTGCCCCTGATTCCCTCCAAGAGACTAACTTAACTGGAGCAGAATCTGGCAGTTTGGGAACCTCTTCTGAAAACCCAGTATCTCATGAAGATTTGTATTGTGAGTATCCACCTAAAGGAAATGTTGGGAAGAACAAGACAGGGCAATCAAGCAATTCAAATTCAAGAAAGGGATCCAAGAAAACCAGAGACCAGCAATCTTCGAACCAAGGAACAACGACTGTTGAGAAAACTAAGGGAACTGATAAACTGAGTCGCATAAATTCAAGATCTGAGAAGGCAGAACCATGGCGGTGA 1137 0.4433 MEIGWPTNVRHVAHVTFDRFNGFLGLPDEFEPEVPRRPPSASATVFGVSTESMQLSFDSRGNSVPTILLLMQRRLYSEGGLQAEGIFRINADNSQEEHVREQLNRGVVPESIDVHCLAGLIKAWFRELPIGVLDSLSPEQVMKSQTDEECAELARNLPPTEAALFDWAINLMADVVQYEHLNKMNARNVAMVFAPNMTQMADPLTALMYAVQVMNFLKTLILRTLRERKDSIVESSPGFYLEPSDDNSHNSPIQFCQPDSSKDNEEAQALTNEKTVSETDPAPDSLQETNLTGAESGSLGTSSENPVSHEDLYCEYPPKGNVGKNKTGQSSNSNSRKGSKKTRDQQSSNQGTTTVEKTKGTDKLSRINSRSEKAEPWR 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g1175 378 PANTHER MKIAA1688 PROTEIN 1 347 IPR044785 GO:0005096
Lele31g1175 378 Gene3D CRIB domain 1 33 IPR036936 -
Lele31g1175 378 SUPERFAMILY GTPase activation domain, GAP 43 222 IPR008936 -
Lele31g1175 378 CDD RhoGAP 65 221 - -
Lele31g1175 378 ProSiteProfiles CRIB domain profile. 3 16 IPR000095 -
Lele31g1175 378 Gene3D Rho GTPase activation protein 36 232 IPR008936 -
Lele31g1175 378 FunFam Rho GTPase-activating protein 5 33 226 - -
Lele31g1175 378 Pfam P21-Rho-binding domain 2 29 IPR000095 -
Lele31g1175 378 MobiDBLite consensus disorder prediction 359 378 - -
Lele31g1175 378 MobiDBLite consensus disorder prediction 236 378 - -
Lele31g1175 378 SMART PBD_5 3 37 IPR000095 -
Lele31g1175 378 MobiDBLite consensus disorder prediction 344 358 - -
Lele31g1175 378 ProSiteProfiles Rho GTPase-activating proteins domain profile. 48 233 IPR000198 GO:0007165
Lele31g1175 378 SMART RhoGAP_3 62 225 IPR000198 GO:0007165
Lele31g1175 378 CDD CRIB 1 41 - -
Lele31g1175 378 MobiDBLite consensus disorder prediction 241 308 - -
Lele31g1175 378 Pfam RhoGAP domain 65 199 IPR000198 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g1175 Lele-ChrLele31 18238990 18242628 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele12g0260 12 2250237 2250788 Lele31g1175 31 18238990 18242628 CCT
Lele31g1175 31 18238990 18242628 Lele09g1050 09 19760130 19761128 CCT
Lele31g1175 31 18238990 18242628 Lele10g1012 10 21563521 21564522 CCT
Lele31g1175 31 18238990 18242628 Lele11g1051 11 17803482 17804480 CCT
Lele31g1175 31 18238990 18242628 Lele12g0267 12 2293431 2294435 CCT
Lele29g0364 29 2244563 2248432 Lele31g1175 31 18238990 18242628 hybridization
Lele30g1036 30 13714339 13717311 Lele31g1175 31 18238990 18242628 hybridization