Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g1136 ATGGATGAAATCGAAGTTCCTCAGTATTTCGTGTGTCCCATTTCGCTTCAGATCATGAAGGATCCCGTGACAACATTCACCGGCATAACCTACGACAGAGAAAGCATCGAACAATGGTTGCTCCGGGTCAAAGAACACAAGTGTCCTGTCACCAAGCAGCCATTGCCCAGAGGCTCCGATCTCACTCCCAACCACACCCTCCGCCGTCTCATCCAAGCTTGGTGCTCCGAAAACGCCGCTCACGGCGTTGATCGCATCCCTACCCCTAAATCCCCTCCCTCCAAGACCCTCCTCCAGAAACTGATCAGAAATCTCGAGCTTCCCCATCTGTACCAATCCGCAGTGGAGAGATTGCATTCTCTGGCCACAGAAAACCAAAGGAACCTCAAGTGCATGGTAGAATCCGGTGTGGCCGAGTCCATGATTCATCTCATTACCAAAAAGTCCAAGGATTCAGGTAACAACACTAATTCCCTCGAACAATCTCTGCGAATTCTACGCCTTCTCTGGAGTTATTGCAACAACAACATCAAGCCTCTGGTCGTCCACAACATCGACTTCATCAAATCGCTGACCTGGATTATTCAGCTCTACGTGGACACCAACGTCAATCTGATAAACGAAGCAATGCCCGTGTTAAAATGCACCATCGAACTCGCAGATTCAACACTTTTAGGAAGTTTGAAACCCGATTTCTTCAGTGAAATCACAAGGGTGCTCAGAAACAGATCGATCTCACAAGCAGCCATGAAGTCGGCCTTGCAAATTCTCATAGAAACGTGTCCTTTAGGTAGAAACAGAACGAGGATAGTGGAAGCAGGAGCAGTATATGAATTGATCGAGCTTGAGATAGAGAAACACGAGAAGAACATAACGGAGCTTATATTTAACCTGCTTGGGCAGCTATGTGCATGTGCGGACGGGAGGGAACAATTCTTGTCACACGCGGCGGGGATTGCGGTGGTGTCGAAGAGGGTTCTGAGGGTGTCTCCGGCGACGGATGATAGGGCGGTTCATGTGTTGTGGTTGATGGCGAGGTACTCAGGGTCAAACGACGTCGTATTGGAGATGTTGAGGGTGGGAGCTGTAACTAAGCTTTGCATGGTGATTCAGGCCATTTGTGATCCGAGTTTGAAAGAGAAAGCGAGATCGATACTGAGATTGCACTCCAATATTTGGAATGATTCGCCTTGTATTCAAGTTTATCTGTCAACCAGGCACCAAAGGTGA 1230 0.4837 MDEIEVPQYFVCPISLQIMKDPVTTFTGITYDRESIEQWLLRVKEHKCPVTKQPLPRGSDLTPNHTLRRLIQAWCSENAAHGVDRIPTPKSPPSKTLLQKLIRNLELPHLYQSAVERLHSLATENQRNLKCMVESGVAESMIHLITKKSKDSGNNTNSLEQSLRILRLLWSYCNNNIKPLVVHNIDFIKSLTWIIQLYVDTNVNLINEAMPVLKCTIELADSTLLGSLKPDFFSEITRVLRNRSISQAAMKSALQILIETCPLGRNRTRIVEAGAVYELIELEIEKHEKNITELIFNLLGQLCACADGREQFLSHAAGIAVVSKRVLRVSPATDDRAVHVLWLMARYSGSNDVVLEMLRVGAVTKLCMVIQAICDPSLKEKARSILRLHSNIWNDSPCIQVYLSTRHQR 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g1136 409 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Lele31g1136 409 SUPERFAMILY ARM repeat 156 388 IPR016024 -
Lele31g1136 409 Coils Coil 277 297 - -
Lele31g1136 409 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Lele31g1136 409 Gene3D - 91 395 IPR011989 -
Lele31g1136 409 PANTHER WDSAM1 PROTEIN 3 400 IPR045185 GO:0061630
Lele31g1136 409 SUPERFAMILY RING/U-box 3 84 - -
Lele31g1136 409 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 85 IPR013083 -
Lele31g1136 409 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g1136 Lele-ChrLele31 17996678 17997907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g1136 2 399 U-box Gene Family AT2G35930 43.812 2.96e-107 320