Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g1128 ATGGCTCATTTTATGGTGTTGTTTCTGAGGGGAGATCTCTGGCAAAATGTAAAAGTGGAATTGAAAACATCTAGACGGAAGTCAGTACATAACAGAGGCTCTCTCCTCTCTTTCAATTTCCTTGTTCATCCCGCTTTCGTTCAGCGATCAATGGAGATTCAGTCTTCTCTTAAGCTCTACCTTCTTCTGTGCTTATCAATCCTCTTGCTTTCATCTTCTCATGCTCAAGCTGGGAAGGTCAAATACTGCGATAAGAAGCAAAACTATGCTGTGAAGGTTGCTGGAGTTGATATATTGCCTGATCCTGTGGTGAGAGGCAAGCCTGCTACCTTTAAGATATCAGCTTCTACTGGTGAAGCTATTTCTGGTGGGAAGCTAATAATTGAAGTTTCATACTTTGGGGTGCATGTCCATACTGAAACTCGCGATCTCTGTGATGAAGTGTCCTGTCCTGTTGCAGCAGGCGACTTTGTGATTGCTCACACCCAAACACTGCCTTCATTTACCCCACCAGGTTCCTACACTTTGAAGATGACGATGGAGGATTTGAACGAGGAGCAGTTATCTTGCATTAGCTTCAACTTTAAAATTGGTTTCAGGTCTTCCGTGATTCTTGAACGTACACTTGTATTGGTCAAGAGTTTGGAGGCTGTAATATGTGATGCTCAGTTTAGAAGTTTTGAGGACATATCTAATGAATTGTCTTTATTATTTGGTAAAATGAGACAGCAGGGACAGTATGGTGATCCATCGTCCAATGCTTATGTTGCTTCTCAGATGCATCACATGGCTGATCAGAGAATGGAAACCAAACATAATCATTTTGAAGAACAGCTCGAGGCCTTCACTCCAGAGAGAGAGAACCCATATGCAAATTCCAAGCCAGAGGTTCAGCGAAGATGGGAAATGGATGGATCAAATACAATGAATTCGGTGGCATCTTGTCAAGGGGGTGATGCTTCAAGATCCTTTTTTCAGGATCAGAGGCCGGATCATAAGATGGCTTTGCAGAATCAGAGCAAAAACCCCAGATCTCTGGTCCGTAAAGAAGACACAGATGTTATATATGAGGTAAACAATTTATCACAGACTTATGAATGTCTTGAGCAGAAGTTTCTGGATGACATTCTAAAACTATCCAAAGAACAGAATGATGCTGAAGATGTAGAGAACGCCAGGCACAGAGAGAAACTAAATGCTATCAATGCTCAGTATGAAGAAAAATTGGCGGCACTTCGATCTCAGCATGCTAGCAGAAGAAATGAGTTTCTTCAAAGAGAATCCAAAGCAAGACAACACCAGTACCAGCAAACCATAAGAGATCCTCACCCAAGTAGTGGCATGCCTCCCGGTGATCCTTGTGGTTACAGTTCTGCTATTGCTTCCACGGCGGTTGGAGAAATGCAAATGCAACGTAGCTATGTAGCCGATCCCTTTGATCGGTATGTGGAGTGTAATCGATTTCTCGGAGGAGGTGCAAGAGTTCAAGAATTTGAGCCTAGAGGATCATATCCTGGTGGCCGTGTTTATGACACTGGATCCCGCCACTACAATTGA 1557 0.431 MAHFMVLFLRGDLWQNVKVELKTSRRKSVHNRGSLLSFNFLVHPAFVQRSMEIQSSLKLYLLLCLSILLLSSSHAQAGKVKYCDKKQNYAVKVAGVDILPDPVVRGKPATFKISASTGEAISGGKLIIEVSYFGVHVHTETRDLCDEVSCPVAAGDFVIAHTQTLPSFTPPGSYTLKMTMEDLNEEQLSCISFNFKIGFRSSVILERTLVLVKSLEAVICDAQFRSFEDISNELSLLFGKMRQQGQYGDPSSNAYVASQMHHMADQRMETKHNHFEEQLEAFTPERENPYANSKPEVQRRWEMDGSNTMNSVASCQGGDASRSFFQDQRPDHKMALQNQSKNPRSLVRKEDTDVIYEVNNLSQTYECLEQKFLDDILKLSKEQNDAEDVENARHREKLNAINAQYEEKLAALRSQHASRRNEFLQRESKARQHQYQQTIRDPHPSSGMPPGDPCGYSSAIASTAVGEMQMQRSYVADPFDRYVECNRFLGGGARVQEFEPRGSYPGGRVYDTGSRHYN 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g1128 518 Pfam ML domain 79 197 IPR003172 -
Lele31g1128 518 SMART pgtp_13 80 195 IPR003172 -
Lele31g1128 518 Coils Coil 379 422 - -
Lele31g1128 518 CDD PG-PI_TP 80 195 IPR033917 GO:0032366
Lele31g1128 518 PANTHER NIEMANN PICK TYPE C2 PROTEIN NPC2-RELATED 58 197 IPR039670 GO:0015918|GO:0032934
Lele31g1128 518 SUPERFAMILY E set domains 79 197 IPR014756 -
Lele31g1128 518 MobiDBLite consensus disorder prediction 498 518 - -
Lele31g1128 518 FunFam putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 78 199 - -
Lele31g1128 518 MobiDBLite consensus disorder prediction 435 454 - -
Lele31g1128 518 Gene3D - 79 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g1128 Lele-ChrLele31 17923364 17933343 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele31g1128 31 17923364 17933343 Lele10g0976 10 21021013 21023317 CCT
Lele31g1128 31 17923364 17933343 Lele11g1026 11 17415959 17419107 CCT
Lele31g1128 31 17923364 17933343 Lele12g0301 12 2765513 2767649 CCT
Lele29g0418 29 2557129 2560118 Lele31g1128 31 17923364 17933343 hybridization
Lele30g0991 30 13410803 13415757 Lele31g1128 31 17923364 17933343 hybridization