Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g1124 ATGTCGGATATACGGAAGTGGTTTATGAAATCCCATAACAAGGGCAATGCTTCGGAGTCGAAGCCTACGAATGAAGTGAAGCCTTCTTCAGCTAGACCACAACCGGAAAAACCAGTAGCTGGAGGCCAAGATAGTACAGGGAAGAGGAAAACTAGCAAACCTCTTGCCACTGACAAAAACAAAAAAGATGAGAAAGAGGCACAGGAGCTTCCTGCTAAAAGGAAGAATCCCAGGGACAGTGAGGACTTGCAGAAGCCTCTTCCTAAAAAAAATCATTTAGATGATGACTTTACCTTGCTCACATCTAAAAGGAAATCAGTTGATACCACCCCAATAAAAAAATTGAAGAGTGAATCTGGTAAGGGAGTTCCACTTAAGTCTCCTGATTTGGACAAAAGTGACGAGGAAGATGTTAAAGATGATGTATCGCCCATTAAATTTGGTGGAAGGGGACGTGGAGGAAGAGGAGCATCTGCACAATCATCTAGTGGACGGGGTAGAGGGGGTGGAAGGGGTGGATTTATGAATTTTGGCGAAAGAAAAGATCCTCCTCACAAAGGAGAAAAGGAAGTCCCTGAAGGTGCTTCTGATTGTTTGGCCGGCTTGACTTTTGTCATCAGTGGAACATTGGACAGTTTGGAACGAGAAGAAGCAGAAGATTTGATTAAACGCCATGGTGGTCGTGTCACTGGATCAGTCAGCAAAAAAACGAATTATCTTCTATGTGATGAAGATATTGGAGGTAGGAAATCTTCAAAAGCGAAAGAGCTGGGTACAAAATTTCTCACTGAGGATGGGTTGTTTGACATGATTCGTGCATCAAAACCTGCAAAGGCTCCTCCACAGGAAGAATCAAAAAAATTGGTTAATAAGATTGTTGCAACCCAGTCTAAAAGTCCTCAGAAAGCTGGAGTCAAGGTCTCCCAACCTTCAGGATCAGCTTCAGCTCCAGTGACGGCTAAGACTGAAAATTCTGGTCAGTGTTCTTTCATTTGGACGGAGAAGTATCGACCTAAGGTTCCAAATGACATCATAGGAAATCAGTCACTTGTTAAACAGCTTCATGATTGGTTGGCTCATTGGAATGAACAATTTCTTGACAGTGGAAAGAAAAAGGGAAAAAAGCAAAATGACACTGGTTCAAAAAAAGCTGTCTTATTAAGTGGGACCCCTGGCATAGGAAAAACCACTTCAGCGAAGTTGGTCTGTAAGATGCTTGGTTTCCAAGCTATAGAGGTTAATGCTAGCGACAGCCGTGGGAAGGCTGATAGCAAAATTGTTAAAGGAATCAGTGGAAGCAATGCAAACTCTATAAAGGAACTTGTCACCAACGCAGCTTTGGATGCTAAGACAAATGGGGCAAAGCATTCCAAAACTGTGCTCATCATGGATGAGGTTGATGGCATGTCAGCAGGTGATCGGGGTGGCATTGCTGAACTTATTGCTAGCATCAAGATATCAAAAATTCCTATTATCTGCATTTGTAATGACCGCTACAGCCAGAAACTGAAAAGTCTTGTGAACTACTGTCTGCTGCTTAGCTTTCGAAAACCTACAAAGCAACAGATGGCAAAGAGGTTGATGCAAGTTGCAAAAGCTGAAGGGCTTCAAGTCAACGAGATTGCCCTTGAGGAGCTAGCAGAAAGAGTGAATGGAGATATGCGCATGGCAATAAATCAGTTACACTATATGAGCCTCTCCATGTCTGTTATTAACTATGACGACATCAGGCAACACCTTTTTTCCAGCTCAAAGGATGAGGACATTTCGCCATTCACTGCAGTTGATAAGCTTTTTGGTTTTAATGCTGGGAAGTTAAAAATGGATGAGAGGATTAATCTTAGCATGAGTGATCCTGACCTTGTTCCTCTTATTATTCAGGAAAATTATATTAATTATAGACCAAGTGTGGCTAGTAAAGATGACAATGATATGAAGCGCATGAAGTTAATTGCCCGTGCTGCTGAGTCTATTGCTGATGGAGATATAGTGAATGTACAGATTCGAAGATATCGACAGTGGCAGCTCTCTCAAGCTAGTACTCTTGCATCGAGTATAATTCCTGCTTCATTGTTGCATGGGCAAAGAGAAATCCTTGAACCGGGAGAACGGAATTATAATCGGTTTGGTGGTTGGCTGGGGAAAAACTCAACAATAGGCAAAAACTTTAGGCTTTTGGAAGATCTGCATGTTCACATTCTTGCTTCTCGTGAATCCAGTCCCGGAAGGGAGACGCTCCGCTTGGATTATCTAAAACCACTTCTTCAACAGTTGACGGAACCGCTGCGAGTGTTGCCTAAGGATGAAGCTGTTCAGAAAGTTGTGGAATTTATGAATATGTACTCAATCAGTCAAGAGGATTTTGATACTATTGTCGAACTATCAAAATTCAAGGGTCATCCAAATCCACTAGATGGCATACCGCCTGCCGTTAAATCTGCACTTACAAAAGCATACAAAGAAGAAAGCAAGTGTCGGAAGGTTCGAGCTGCAGATCTAGTCACTATTCCTGGAACGAAAAAAGCTGTTAAGAAGCGAGTTGCTGCTATCCTAGAACCATCTGACCAAGGACTGGAACAGGGTAAAGGTGATACCCTGGAAGAGAGTGAAGAAGAGAATTCCTCAGACACAGAGGAGTCAGGAGGTACCACCACTGGTGAGAAGCTGCAGTCAGAACTTCGAAGTTTAAATTCAAAGGCCATGCGAGTACAATTGGATTTGAAGGGAACAGGAAATTCAAGTGCCAAGAAGACGCCGGCGGGAAGAGGTGCATCGGCTGAGAAGGGTGGTCAAGCTTCAAGAGGTAGAGGTGGGGCAAAAAGAAAGAGGTGA 2832 0.4308 MSDIRKWFMKSHNKGNASESKPTNEVKPSSARPQPEKPVAGGQDSTGKRKTSKPLATDKNKKDEKEAQELPAKRKNPRDSEDLQKPLPKKNHLDDDFTLLTSKRKSVDTTPIKKLKSESGKGVPLKSPDLDKSDEEDVKDDVSPIKFGGRGRGGRGASAQSSSGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGASDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIGGRKSSKAKELGTKFLTEDGLFDMIRASKPAKAPPQEESKKLVNKIVATQSKSPQKAGVKVSQPSGSASAPVTAKTENSGQCSFIWTEKYRPKVPNDIIGNQSLVKQLHDWLAHWNEQFLDSGKKKGKKQNDTGSKKAVLLSGTPGIGKTTSAKLVCKMLGFQAIEVNASDSRGKADSKIVKGISGSNANSIKELVTNAALDAKTNGAKHSKTVLIMDEVDGMSAGDRGGIAELIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKRLMQVAKAEGLQVNEIALEELAERVNGDMRMAINQLHYMSLSMSVINYDDIRQHLFSSSKDEDISPFTAVDKLFGFNAGKLKMDERINLSMSDPDLVPLIIQENYINYRPSVASKDDNDMKRMKLIARAAESIADGDIVNVQIRRYRQWQLSQASTLASSIIPASLLHGQREILEPGERNYNRFGGWLGKNSTIGKNFRLLEDLHVHILASRESSPGRETLRLDYLKPLLQQLTEPLRVLPKDEAVQKVVEFMNMYSISQEDFDTIVELSKFKGHPNPLDGIPPAVKSALTKAYKEESKCRKVRAADLVTIPGTKKAVKKRVAAILEPSDQGLEQGKGDTLEESEEENSSDTEESGGTTTGEKLQSELRSLNSKAMRVQLDLKGTGNSSAKKTPAGRGASAEKGGQASRGRGGAKRKR 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g1124 943 Pfam ATPase family associated with various cellular activities (AAA) 385 496 IPR003959 GO:0005524|GO:0016887
Lele31g1124 943 MobiDBLite consensus disorder prediction 125 146 - -
Lele31g1124 943 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 14 934 - -
Lele31g1124 943 MobiDBLite consensus disorder prediction 13 30 - -
Lele31g1124 943 FunFam Replication factor C subunit 1 590 699 - -
Lele31g1124 943 SMART BRCT_7 196 274 IPR001357 -
Lele31g1124 943 Gene3D - 330 517 IPR027417 -
Lele31g1124 943 Pfam BRCA1 C Terminus (BRCT) domain 196 271 IPR001357 -
Lele31g1124 943 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 330 579 IPR027417 -
Lele31g1124 943 Gene3D - 590 699 - -
Lele31g1124 943 MobiDBLite consensus disorder prediction 51 115 - -
Lele31g1124 943 PIRSF RFC1 1 920 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Lele31g1124 943 SUPERFAMILY BRCT domain 194 275 IPR036420 -
Lele31g1124 943 Gene3D BRCT domain 171 273 IPR036420 -
Lele31g1124 943 FunFam Replication factor C subunit 1 330 517 - -
Lele31g1124 943 FunFam Replication factor C subunit 1 170 273 - -
Lele31g1124 943 CDD HLD_clamp_RFC 518 576 - -
Lele31g1124 943 ProSiteProfiles BRCT domain profile. 194 275 IPR001357 -
Lele31g1124 943 FunFam Replication factor C subunit 1 518 589 - -
Lele31g1124 943 SUPERFAMILY post-AAA+ oligomerization domain-like 589 734 IPR008921 GO:0003677|GO:0006260
Lele31g1124 943 Pfam Replication factor RFC1 C terminal domain 658 820 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Lele31g1124 943 CDD AAA 378 481 - -
Lele31g1124 943 MobiDBLite consensus disorder prediction 878 898 - -
Lele31g1124 943 MobiDBLite consensus disorder prediction 178 193 - -
Lele31g1124 943 MobiDBLite consensus disorder prediction 852 943 - -
Lele31g1124 943 SMART AAA_5 381 519 IPR003593 -
Lele31g1124 943 Gene3D - 518 588 - -
Lele31g1124 943 MobiDBLite consensus disorder prediction 1 194 - -
Lele31g1124 943 CDD BRCT_RFC1 194 272 - -
Lele31g1124 943 MobiDBLite consensus disorder prediction 295 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g1124 Lele-ChrLele31 17884439 17891645 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g1124 1 899 Core DNA Replication Machinery Family AT5G22010 68.743 0.0 1118
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele31g1124 31 17884439 17891645 Lele09g1017 09 19310199 19312434 CCT
Lele31g1124 31 17884439 17891645 Lele11g1023 11 17382968 17385852 CCT
Lele29g0422 29 2591335 2598531 Lele31g1124 31 17884439 17891645 hybridization
Lele30g0987 30 13372392 13375605 Lele31g1124 31 17884439 17891645 hybridization