Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g1123 ATGGATCGTCGCATCCATGGCGTCACCACGCTCCGCATCTCTCTTCTCCTTCTTCTCTCCGGCTTCCCCTTTCTCGCATTCTCGGATTATCCAAATCCCAGATTGTCGGTCGCTTCTTCCTCGGGCCAAATAAACTCCAACTCAGTTCTGGTGGCTCTTCTGGATTCGCATTACACCGAACTTGCCGAGCTGGTCGAGAAGGCTATGCTTTTGCAGACTCTCGAAGACACTGTCGGTGCCCACAACGTCACCATCTTCGCACCCAGAAACGAAGCTCTCGAGCGCGATCTCGACCCAGAGTTCAAGCGCTTCCTTCTCGAACCCGGTAATCTCAAGTCTCTTCAGTCCTTGCTCATGTTTCATATCATACCCACCCGTATTGGATCGCAGGAATTGCCCGCTCAAACCGGGTCAGCCCGTCATGAGACGCTCTTTAAGTCCGAGTTCATTCACCTTGCCAATAATGGCACCGGGAAATGGACAGTGGATCACGCCAGGATCATCCACCCCGACGTGGTCTCCCGACCCGACGGAGTGATCCACGGGATCGAGCGCCTCCTGGTCCCTCGTTCCGTCCAAGATGACTTCAACCGTCGGCGGAGTCTTCAGTCCATTACGGCGGTGAAGCCTGAGGGAGCACCGGAGGTTGACCCGAGGACGCATCGCCTCAAGAAGCCTGCTCCTCCGGTTAAACCAGGTTCGCCGCCGGTTTTACCCATTTACGACGCCATGGCTCCGGGACCCTCTCTGGCTCCCGCCCCAGCTCCCGGTCCCGGTGGACCACACCATCATTTCAACGGCGAAGCCCAGGTCAAGGATTTCATCCAGACACTGCTTCATTACGGTGGGTACAATGAAATGGCCGACATTTTGGTGAATCTGACATCCTTAGCAACCGAAATGGGTCGGTTAGTGTCTGAGGGTTATGTCCTGACTGTTTTGGCTCCGAACGATGAAGCCATGGCTAAACTAACCACGGACCAGCTGAGCGAACCTGGTGCTCCGGAGCAGATAATGTACTACCATCTAATACCCGAATATCAAACCGAAGAGAGTATGTACAATTCAGTTCGAAGGTTCGGTAAGGTCCGGTACGATACTCTCCGGTTACCGCATAAGGTGGTAGCTCAGGAGGCAGACGGGTCAGTCAAATTCGGGCAGGGAGACGGATCGGCTTATTTGTTCGACCCCGACATATACACGGACGGTCGTATCTCGGTTCAGGGTATCGACGGGGTTTTGTTCCCACCAGAGGAGGAGGAAAAACCGGTGACCCGGACGGTTCAACCCGCCAAAGTCGTTGTCAAGCATAGAAGAGTGGATACTGATAATGATGCGAATGAAAATTGCTGGAAGCTGCATGCCGGATGCTTGGAACCTTTGGACAGGTTTCTAGATTCGCCACTTGCCACTGAAGAACCAGTCCTTTGGCTGGCAACATACGTATTCACAATTATATTGGTGGAAGTCCCAAAGATGTAA 1482 0.5351 MDRRIHGVTTLRISLLLLLSGFPFLAFSDYPNPRLSVASSSGQINSNSVLVALLDSHYTELAELVEKAMLLQTLEDTVGAHNVTIFAPRNEALERDLDPEFKRFLLEPGNLKSLQSLLMFHIIPTRIGSQELPAQTGSARHETLFKSEFIHLANNGTGKWTVDHARIIHPDVVSRPDGVIHGIERLLVPRSVQDDFNRRRSLQSITAVKPEGAPEVDPRTHRLKKPAPPVKPGSPPVLPIYDAMAPGPSLAPAPAPGPGGPHHHFNGEAQVKDFIQTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIMYYHLIPEYQTEESMYNSVRRFGKVRYDTLRLPHKVVAQEADGSVKFGQGDGSAYLFDPDIYTDGRISVQGIDGVLFPPEEEEKPVTRTVQPAKVVVKHRRVDTDNDANENCWKLHAGCLEPLDRFLDSPLATEEPVLWLATYVFTIILVEVPKM 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g1123 493 FunFam Fasciclin-like arabinogalactan protein 16 266 417 - -
Lele31g1123 493 ProSiteProfiles FAS1/BIgH3 domain profile. 271 399 IPR000782 -
Lele31g1123 493 SUPERFAMILY FAS1 domain 41 190 IPR036378 -
Lele31g1123 493 Pfam Fasciclin domain 296 416 IPR000782 -
Lele31g1123 493 Pfam Fasciclin domain 57 189 IPR000782 -
Lele31g1123 493 Gene3D FAS1 domain 290 417 IPR036378 -
Lele31g1123 493 SMART fasc_3 312 417 IPR000782 -
Lele31g1123 493 SMART fasc_3 84 190 IPR000782 -
Lele31g1123 493 SUPERFAMILY FAS1 domain 250 418 IPR036378 -
Lele31g1123 493 MobiDBLite consensus disorder prediction 209 236 - -
Lele31g1123 493 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 9 442 IPR044654 -
Lele31g1123 493 Gene3D FAS1 domain 49 190 IPR036378 -
Lele31g1123 493 ProSiteProfiles FAS1/BIgH3 domain profile. 45 187 IPR000782 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g1123 Lele-ChrLele31 17880089 17882943 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0423 29 2599955 2602794 Lele31g1123 31 17880089 17882943 hybridization
Lele30g0986 30 13368279 13371185 Lele31g1123 31 17880089 17882943 hybridization