Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g1111 ATGGCCAGAGGGAGTGGACTCTCCATTGATTCAGATCCAGCTTTGATGAGCAGCTTCTTCCTCTCCAATCCCATTGTTCTCAACTCTTTCCCTCTCGAAGACCACGCCCTTCAACCGCCCATGGAATCTTCAATCCCTTTCCCTGAGATGGACTTCTTCTCTAACAGCAACAATCTCAAGCCTGCATCTTCCAACGCCGATTCCTCAGCCCCTCCTCATCCTCTTCAATTCAAAGTAAACACTGTTCTGAATCTCTTGACTACTAACACCGATCAAACCTTTGGGGATGATGAGCTTGCCATATATTCTAGTTCTAGAGAGAAACGAGCCAAGATTGAGATTGAGATTGCTGTTCTTCAAGCTGAGTTAGAGGAGATGATAGGAGAGAATCATAAGCTAAACGACATGCTAAACAAGGCTAACACCGATTACAATGCGCTGAAGATGCATATAGACTTTATCGAGTCTCGCAAGGGTAGTGATGAGGATGCTGAGAAACCTGAAAACAAAGTGCCTGATGTAAGTCCGGAAGGAAACAAACAAACTGAGAGTAATAGAAGAACCTTAGTGCCAAGGAAATTTATAGATCTTGGATTAGATTCAATCAATGAAGGTGATCATCAGGCTAATAGTGATGAGCCTCCACTTTCTTCTGCCAAAAGGAGAAACAGTGACGGATCAAGATCACCATTGGAGGTGGAATGCAGCGCCAGAATTGGTTCCAATAAGAATGAATTCAATAAAGAAACTGAAATCAAACAAGAAGCAGGCAAAATTCAGAAGTATAGTCCTCCTTCGGAAAATGTTGATGATCAAGTGGAAGCCACGATGAAGGCAAGAGTTTCAGTTAGAGCTCGATCAGAAGCACCTATGATTACGGATGGATGTCAATGGAGAAAATATGGGCAGAAGATGGCCAAAGGGAATCCATGCCCTCGAGCTTATTATCGATGCACCATGGCTCCAGGCTGTCCTGTTAGGAAACAGGTGCAAAGATGTGCAGAGGATCGATCAATCTTAGTAACAACATATGAAGGAAACCATAGCCACACATTGCCTCCAACAGCAATGACGATGGCACAAACAACAACAGCAGCAGCAAAGATGTTGCTTTCAGGATCAATGTCAAGCAGTGATGGTCTAATGAATGGAAGCTTCTTGACAAGGACGGCATTGCTTCCCTGTTCTTCAAGTAACATGATAGCAACTCTCTCAGCCTCAGCTCCATTTCCAACTGTTACGTTGGACTTAACTATTCCTCCAACAACACAACCTTCTACCCAATTTCATAGGCCTTTCTCAAATGATAATGCCTCTCATGGTTTTAGTCAAGTTTTGGCTCAAGCACTATGTAGCAGCAATCAGTCAAGTTTTTCAGGGCTTCAAATGAACAACAAAGACCCTTTGCCATTCAATGCTGCTATAGCAGCTAACCCTAACTTCACAGCAGCTTTAACAGCGGCTATTACTTCCATTATGGGTTCTACTCTGCCAAAGAACATTAACAGTGACAATAATGGCAATGTTGCAAGTGGCAATAACAATGATTCAAAATTCTTAGGGAACTAG 1569 0.4296 MARGSGLSIDSDPALMSSFFLSNPIVLNSFPLEDHALQPPMESSIPFPEMDFFSNSNNLKPASSNADSSAPPHPLQFKVNTVLNLLTTNTDQTFGDDELAIYSSSREKRAKIEIEIAVLQAELEEMIGENHKLNDMLNKANTDYNALKMHIDFIESRKGSDEDAEKPENKVPDVSPEGNKQTESNRRTLVPRKFIDLGLDSINEGDHQANSDEPPLSSAKRRNSDGSRSPLEVECSARIGSNKNEFNKETEIKQEAGKIQKYSPPSENVDDQVEATMKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAPGCPVRKQVQRCAEDRSILVTTYEGNHSHTLPPTAMTMAQTTTAAAKMLLSGSMSSSDGLMNGSFLTRTALLPCSSSNMIATLSASAPFPTVTLDLTIPPTTQPSTQFHRPFSNDNASHGFSQVLAQALCSSNQSSFSGLQMNNKDPLPFNAAIAANPNFTAALTAAITSIMGSTLPKNINSDNNGNVASGNNNDSKFLGN 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g1111 522 SUPERFAMILY WRKY DNA-binding domain 285 353 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele31g1111 522 MobiDBLite consensus disorder prediction 500 522 - -
Lele31g1111 522 Pfam WRKY DNA -binding domain 294 350 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele31g1111 522 Gene3D WRKY domain 277 354 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele31g1111 522 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 96 505 IPR044810 GO:0003700
Lele31g1111 522 Coils Coil 102 143 - -
Lele31g1111 522 ProSiteProfiles WRKY domain profile. 287 353 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele31g1111 522 MobiDBLite consensus disorder prediction 204 224 - -
Lele31g1111 522 MobiDBLite consensus disorder prediction 157 248 - -
Lele31g1111 522 MobiDBLite consensus disorder prediction 157 173 - -
Lele31g1111 522 FunFam probable WRKY transcription factor 31 277 354 - -
Lele31g1111 522 SMART WRKY_cls 292 352 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g1111 Lele-ChrLele31 17810672 17813129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g1111 79 496 WRKY Transcription Factor Family AT1G62300 47.059 3.16e-100 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lele31g1111 WRKY 5.8e-24 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g1015 11 17259513 17263001 Lele31g1111 31 17810672 17813129 CCT
Lele12g0306 12 2854208 2858054 Lele31g1111 31 17810672 17813129 CCT
Lele29g0436 29 2659263 2661703 Lele31g1111 31 17810672 17813129 hybridization
Lele30g0970 30 13293623 13296095 Lele31g1111 31 17810672 17813129 hybridization