Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g1106 ATGGATTGGAGCAGAGGCCATACGCTGGGCCGCGGCTCCTCCGCCACTGTCTCTCTCGCCTCCTCTTCCTCCTCCTCCTCTGACCTCCTCTTCGCCGTCAAGTCATCGGAGCTCTCTCGCTCTCTGTTCTTACAGAGAGAACAGAGTATCCTATCCACTGTTTCTTCTCCTTATATTGTTGGCTATAAGGGGTGTGATGTTAATAGAGAGAATAACAAGCTCTTTTACAATCTCTTCATGGAGTACATGCCCTTCGGTACCGTTCTTCAGGCGGTTCAACGGCACGGTGGATGCATCGAATTGGGGGTGGTAGGGTTCTACACTTGGCAGATTTTGCAGGGGTTGGAGTATTTACATTCCAACGGGTTGGTACATTGTGACATTAAGAGCACCAACATATTGATTGGTGAAGATGGAGCGAAGATTTCGGATTTTGGGTGTGCCAAGCGGGTTGATGACACGGCGGTGCCGATCAGCGGGACGCCGATGTTTATGGCGCCGGAGGTGGCGCGTGGGGAAGAACAGGGGTGTGCTGGTGATATTTGGGCACTTGGGTGCACAGTGATCGAAATGGCTTCTGGGGTTTCGCCGTGGCCGAACATGGCGGACCCTTTCTCGGTTCTTCACCGGATCGCATATTCCGGCGAGACGCCCGAGATTCCAGGGTTTCTACCAGAGGAAGCAAAGGATTTCTTGGACAAGTGCTTGAGGAGGAATCCGACGGAGAGATGGACGGCTACTCAACTGTTTAAACACCCATTCGTTACGGAATTCAATTCGAAATCCATCGACAAGGAAATTCAAAAACTCAATTCGAGTTCGCCCACATGCGTACTGGAGCATGGTTTTTGGAATTCCACGGAAGAATCGGAAACTCACGGAAATTTGATCCGTACGAGGTTCGAAAATTCGGCCGCCGAAAAAATCAGAAGGTTAGCTGAATTCTCATCAGAACCCAGATGGACAAATGATGATAATTGGATCACAATCAGAGGAATCGACGAAGCATCAGCTTCAACCAGCGACGATGGTTCGGAAGAGTCGGTGAAAAGCAACGTTAGAAGTAGAATTAGTGGGTGTTTCACCGGAAATTACGAATTTAGTGAAATTAGTGATATGATTAGTACTCATTACAATTTTGAGAGAGGCACTGTGAATAGGATGTTACAGCCTTCCATGTCAGTTTATTCATGA 1194 0.4849 MDWSRGHTLGRGSSATVSLASSSSSSSDLLFAVKSSELSRSLFLQREQSILSTVSSPYIVGYKGCDVNRENNKLFYNLFMEYMPFGTVLQAVQRHGGCIELGVVGFYTWQILQGLEYLHSNGLVHCDIKSTNILIGEDGAKISDFGCAKRVDDTAVPISGTPMFMAPEVARGEEQGCAGDIWALGCTVIEMASGVSPWPNMADPFSVLHRIAYSGETPEIPGFLPEEAKDFLDKCLRRNPTERWTATQLFKHPFVTEFNSKSIDKEIQKLNSSSPTCVLEHGFWNSTEESETHGNLIRTRFENSAAEKIRRLAEFSSEPRWTNDDNWITIRGIDEASASTSDDGSEESVKSNVRSRISGCFTGNYEFSEISDMISTHYNFERGTVNRMLQPSMSVYS 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g1106 397 FunFam Mitogen-activated protein kinase kinase kinase 17 2 309 - -
Lele31g1106 397 ProSitePatterns Protein kinases ATP-binding region signature. 9 34 IPR017441 GO:0005524
Lele31g1106 397 ProSiteProfiles Protein kinase domain profile. 3 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele31g1106 397 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Lele31g1106 397 SMART serkin_6 3 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele31g1106 397 Pfam Protein kinase domain 5 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele31g1106 397 MobiDBLite consensus disorder prediction 1 21 - -
Lele31g1106 397 CDD STKc_MAPKKK 33 255 - -
Lele31g1106 397 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 335 - -
Lele31g1106 397 Gene3D Transferase(Phosphotransferase) domain 1 2 324 - -
Lele31g1106 397 SUPERFAMILY Protein kinase-like (PK-like) 3 263 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g1106 Lele-ChrLele31 17791627 17792820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g1106 1 287 MAP Kinase Kinase Kinase AT2G32510 55.102 2.07e-107 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lele31g1106 Pkinase 2e-51 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g1012 11 17230956 17231345 Lele31g1106 31 17791627 17792820 CCT
Lele12g0308 12 2876701 2877090 Lele31g1106 31 17791627 17792820 CCT
Lele09g1011 09 19179837 19183327 Lele31g1106 31 17791627 17792820 CCT
Lele10g0970 10 20934551 20938100 Lele31g1106 31 17791627 17792820 CCT
Lele31g1106 31 17791627 17792820 Lele09g1009 09 19132519 19148816 CCT
Lele31g1106 31 17791627 17792820 Lele10g0967 10 20882437 20890050 CCT
Lele31g1106 31 17791627 17792820 Lele11g1011 11 17215001 17223284 CCT
Lele31g1106 31 17791627 17792820 Lele12g0309 12 2892494 2900094 CCT
Lele29g0438 29 2675315 2676511 Lele31g1106 31 17791627 17792820 hybridization
Lele30g0967 30 13276261 13277406 Lele31g1106 31 17791627 17792820 hybridization