Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g1103 ATGGTTATGTATAATGTAGTAACAAGAAATGAACAACCACCCAAAGATGCCTCTGAAGAAGCTAAAACTGCTAGCCATTGTGGCAATAATGCAAATGAAGTCTCTTCAGGTTCACATTCCAGTTTTGAAGATGAAGAAGCTTTGAACTCCTTTCCTGACTTAAATGAAGAACCTACTTCAAGCTTTTGCCCTTCTGATGAGGTAGAAGACAACTCTGATTCATCCAATAGCTGGACTACACCGCGTAGAAAGAGAAAAGGAAGGAAAAGGAGAAAACTCAGCTCTAAAAATGGACAGTCCAGTCAGGACATGGGAGAGTTGGACGATGGAGACAATGATGGCTCCCCAAGAGTTCAGCGGCAACCAATTGACCATGATTTGATTAGCCTGAGGAAGAAGAAAAAAACAAAAAGAGGAAAAAAAGATCCAAAGCCAGTGTTGTTGTGGAAGGTGTGGGAAGAGCAGAATGAGAGATGGATCGATGAGAATTTATCAGAAGATGTTGACTTGGATCATCAGAATCAACTAATGAATGAAACTGCTGAGGCTTCCTCCGATCTTACTATGCCGTTACTAAGATACCAAAAGGAATGGCTAGCATGGGCTTTGAAACAGGAGAATTCTGAAATTAGGGGGGGCATTCTTGCAGACGAAATGGGGATGGGAAAGACTATTCAAGCAATTGCTCTTGTCCTTGCCCAACGTGAAATCCAGCAAATGGTTTGTGAACCAGATGAAACATCTTCTTTGCCAGGTTCATCTACAGTCTTGTCTAGGACCAAAGGAACGCTTGTTATTTGTCCTGTGGTTGCTGTCACTCAGTGGTTTAGTGAGATTGATAGTTTTACCCTAAAAGGAAGCACCAAGGTGCTAATTTATCATGGAGCCAATAAAGGGAAGTGTAGGGAAGAGTTATCAGATTATGATTTTGTAATAACTACATACTCTACTGTCGAAGTAGAGTACAGAAAGTATATGATGCCTCCTAAGGAGAAGTGCCCATATTGTGACAAATCTTTTAGCCACACGAAGTTATCTGTTCACCAGAGATATTATTGTGGGCCTGGTGCTGAGAGAACAGAAAAACAATCGAAACAATTCAAGAAAAAGAAAAGAGAAGTTAATAAAAAGAAAATTCAGATGGACAAGGGACCAGATAATTCAGATGCCACACACAAGGGGAAGTCCCTTTTACATATTGTAAAGTGGCAGCGGATCATTTTGGATGAGGCACACTATATTAAATCTAGACAATGTAACACTACAAAAGCAATTCTTGCTCTTGAGTCTTCCTATAAATGGGCGTTAAGTGGAACTCCCCTTCAGAATCGTGTGGGAGAGCTGTATTCTCTGGTACATTTCCTGCAAATAGTTCCTTATTCCTATTACTTGTGCAAGGACTGTGATTGCAGGGTTCTTGATCATAGTTCTGGGGAATGTTCATACTGCCTGCACAGTTCTGTCAGGCATTTCTGCTGGTGGAATAAATATATCGCCACGCCTATTCAATTATATGGAAACATTGATACTGGAAAGAGAGCAATGATATTGCTTAAACACAAGGTTTTAAAAAGTATAATATTAAGGCGTACTAAAGTAGGTCGGGCTGCTGATCTCGCACTTCCACCTAGAATTGTTTCATTGAGAAAGGATGGCTTGGATATAAAAGAGCAAGACTATTATGAATCATTGTACAATGAGAGTCAGGCACAGTTTAATACATATGTGGAATCAAATACTTTGACGAATAACTATGCTCATATATTTGACCTCCTCACCAGACTTCGGCAGGCTGTTGATCATCCTTACCTTGTTGTATATTCTCAAGCTGCATTATTAAAAGCTGGAGTTGAGGTTAGCAATGGCAATGTTGAACAAGTATGTGGCCTTTGTCATGACCCAGTAGAAGATCCTGTGGTTACCTCATGTGAACACATCTTTTGTAAGGCATGCTTGATCGACTTCTCTGCTTCCTTGGCGCGAGTGTCATGCCCTTCATGCTCCAAATTACTTACTGTTGATTTAACTTCAAATAAGGATGTTGGGGATCAGCCTAGAAAAACAACAATAAAGGGTTTCAGATCCTCAAGCATTTTAAATAGAATTCGGCTGGAGAACTTTCAAACAAGCACTAAAATAGAGGCATTGAGAGAAGAAATTCGATTCATGGTAGAAAGGGATGGCTCTGCAAAAGGGATTGTTTTTAGCCAGTTCACTTCATTCTTGGATCTCATAAACTACTCCCTGCTCAAGTCTGGTGTGTCTTGCGTTCAACTGAATGGAAGCATGTCATTAGCTGCCCGGGATGCAGCCATTAAGAGATTTACTGATGATCCAGAATGCAAAATTTTTCTCATGAGCTTGAAAGCCGGTGGTGTTGCCCTCAATTTGACTGTTGCATCACATGTTTTCATTATGGACCCTTGGTGGAACCCAGCTGTGGAGCGTCAGGCTCAAGATAGAATTCACCGAATAGGGCAATATAAACCAATCAGGATTGTGAGGTTTGTGATCGAGAACACTATTGAGGAGAGGATTTTGAAGCTTCAACAGAAGAAGGAGCTAATATTTGAAGGGACTGTTGGTGGCTCTGCCGAGGCTCTGGGCAAACTCACGGAGGCAGACATGAGATTTCTGTTCGTTACCTGA 2649 0.4103 MVMYNVVTRNEQPPKDASEEAKTASHCGNNANEVSSGSHSSFEDEEALNSFPDLNEEPTSSFCPSDEVEDNSDSSNSWTTPRRKRKGRKRRKLSSKNGQSSQDMGELDDGDNDGSPRVQRQPIDHDLISLRKKKKTKRGKKDPKPVLLWKVWEEQNERWIDENLSEDVDLDHQNQLMNETAEASSDLTMPLLRYQKEWLAWALKQENSEIRGGILADEMGMGKTIQAIALVLAQREIQQMVCEPDETSSLPGSSTVLSRTKGTLVICPVVAVTQWFSEIDSFTLKGSTKVLIYHGANKGKCREELSDYDFVITTYSTVEVEYRKYMMPPKEKCPYCDKSFSHTKLSVHQRYYCGPGAERTEKQSKQFKKKKREVNKKKIQMDKGPDNSDATHKGKSLLHIVKWQRIILDEAHYIKSRQCNTTKAILALESSYKWALSGTPLQNRVGELYSLVHFLQIVPYSYYLCKDCDCRVLDHSSGECSYCLHSSVRHFCWWNKYIATPIQLYGNIDTGKRAMILLKHKVLKSIILRRTKVGRAADLALPPRIVSLRKDGLDIKEQDYYESLYNESQAQFNTYVESNTLTNNYAHIFDLLTRLRQAVDHPYLVVYSQAALLKAGVEVSNGNVEQVCGLCHDPVEDPVVTSCEHIFCKACLIDFSASLARVSCPSCSKLLTVDLTSNKDVGDQPRKTTIKGFRSSSILNRIRLENFQTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLLKSGVSCVQLNGSMSLAARDAAIKRFTDDPECKIFLMSLKAGGVALNLTVASHVFIMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQQKKELIFEGTVGGSAEALGKLTEADMRFLFVT 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g1103 882 CDD SF2_C_SNF 710 837 - -
Lele31g1103 882 CDD DEXDc_SHPRH-like 191 530 - -
Lele31g1103 882 Gene3D - 193 337 IPR038718 -
Lele31g1103 882 Pfam Zinc finger, C3HC4 type (RING finger) 628 667 IPR018957 GO:0046872
Lele31g1103 882 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 204 458 IPR014001 -
Lele31g1103 882 ProSitePatterns Zinc finger RING-type signature. 643 652 IPR017907 -
Lele31g1103 882 MobiDBLite consensus disorder prediction 110 130 - -
Lele31g1103 882 MobiDBLite consensus disorder prediction 81 95 - -
Lele31g1103 882 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 620 699 IPR013083 -
Lele31g1103 882 Pfam SNF2-related domain 205 605 IPR000330 GO:0005524|GO:0140658
Lele31g1103 882 SMART helicmild6 743 826 IPR001650 -
Lele31g1103 882 MobiDBLite consensus disorder prediction 23 45 - -
Lele31g1103 882 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 401 880 IPR027417 -
Lele31g1103 882 Gene3D - 338 463 IPR038718 -
Lele31g1103 882 Pfam Helicase conserved C-terminal domain 712 826 IPR001650 -
Lele31g1103 882 MobiDBLite consensus disorder prediction 53 78 - -
Lele31g1103 882 ProSiteProfiles Zinc finger RING-type profile. 628 668 IPR001841 -
Lele31g1103 882 MobiDBLite consensus disorder prediction 377 391 - -
Lele31g1103 882 SUPERFAMILY RING/U-box 625 672 - -
Lele31g1103 882 MobiDBLite consensus disorder prediction 1 141 - -
Lele31g1103 882 Coils Coil 357 377 - -
Lele31g1103 882 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 145 530 IPR027417 -
Lele31g1103 882 SMART ultradead3 187 463 IPR014001 -
Lele31g1103 882 Gene3D - 552 880 IPR027417 -
Lele31g1103 882 MobiDBLite consensus disorder prediction 363 391 - -
Lele31g1103 882 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 708 872 IPR001650 -
Lele31g1103 882 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 33 880 - -
Lele31g1103 882 SMART ring_2 628 667 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g1103 Lele-ChrLele31 17777010 17782542 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g1103 133 882 RAD5 or RAD16-like Gene Family AT1G05120 66.580 0.0 1060
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele31g1103 SNF2_N 7.4e-49 CL0023