Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g1085 ATGAACGACCTGCTCACTGATTCATTTGTTGGCGACAGTAAAGGTCAGCCTTCTCGACAAAGTGATATTGAGATGGGAACACAGGGTGGGAACAACTATGATATGGGAATGGATGTTTTTAATAAGCAGATTGCAGAGGCTGATAAACAGGTTGATAAGCTGTCTGGGCTACTAAAAAAACTTAAGGAAGCCAATGAGGAGTCCAAAGCTGTCACAAAAGCTTCAGCTATGAAAGCTATTAAGAAGAGGATGGAAAAAGATATTGATGAAGTTGGAAAGATTGCACGTGCGGTCAAAGCAAAAATAGAAGCTATAAACAAAGATAATCTAGCCAACAGACAAAAGCCTGGTTGCGAGAAGGGAACTGGTATTGACAGAGCGAGGATGAACATGACAAATTCCTTGACAAAAAGGTTTAAGGATCTAATGACAGAGTTTCAGACTCTTAGACAAAGAATACAAGATGAATATCGTGAGGTGGTGGAGAGAAGAGTTATTACAGTCACGGGAACTAGACCAGATGATGAGACAATTGACAACCTAATAGAAACTGGAAGCAGTGAGCAAATCTTTCAGAAGGCTATGCTAGAAACAGGACGAGGACAGGTGTTAAATACGGTGGAAGAAATTCAGGAGCGACACGATACTGTGAAGGAAATTGAGAAAAAGCTTCTTGATTTACACCAGATTTACCTTGATATGGCAGTGTTGGTTGATGCTCAAGGAGAAATTTTAGATAACATTGAAAGTCAGAACCTTATTCAGGTCAACAACGCAGTCGATCATGTCCAGAGAGGGACATCTGTGCTACAAAATGCTAAGAAACTGCAGAAGAACTCTCGAAAATGGATGTGCTTTGCCATCATTTTACTATTATTGATAGTAGCTATTATAGTTGTTGGTGTTATCCAACCTTGGAAGAGTAGCAAGGGCGCATGA 939 0.4026 MNDLLTDSFVGDSKGQPSRQSDIEMGTQGGNNYDMGMDVFNKQIAEADKQVDKLSGLLKKLKEANEESKAVTKASAMKAIKKRMEKDIDEVGKIARAVKAKIEAINKDNLANRQKPGCEKGTGIDRARMNMTNSLTKRFKDLMTEFQTLRQRIQDEYREVVERRVITVTGTRPDDETIDNLIETGSSEQIFQKAMLETGRGQVLNTVEEIQERHDTVKEIEKKLLDLHQIYLDMAVLVDAQGEILDNIESQNLIQVNNAVDHVQRGTSVLQNAKKLQKNSRKWMCFAIILLLLIVAIIVVGVIQPWKSSKGA 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g1085 312 MobiDBLite consensus disorder prediction 1 28 - -
Lele31g1085 312 PANTHER SYNTAXIN 37 293 IPR045242 -
Lele31g1085 312 SMART SynN_4 32 158 IPR006011 GO:0016020
Lele31g1085 312 Pfam Syntaxin 40 242 IPR006011 GO:0016020
Lele31g1085 312 CDD SynN 37 194 IPR006011 GO:0016020
Lele31g1085 312 Pfam SNARE domain 243 299 IPR000727 -
Lele31g1085 312 Gene3D - 200 304 - -
Lele31g1085 312 Gene3D - 33 161 - -
Lele31g1085 312 MobiDBLite consensus disorder prediction 1 29 - -
Lele31g1085 312 Coils Coil 44 74 - -
Lele31g1085 312 FunFam Syntaxin 132 32 161 - -
Lele31g1085 312 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 207 250 IPR000727 -
Lele31g1085 312 FunFam Syntaxin 132 200 304 - -
Lele31g1085 312 SMART tSNARE_6 202 273 IPR000727 -
Lele31g1085 312 SUPERFAMILY t-snare proteins 34 266 IPR010989 GO:0016020|GO:0016192
Lele31g1085 312 CDD SNARE_syntaxin1-like 206 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g1085 Lele-ChrLele31 17647888 17651456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g1085 1 312 SNARE and Associated Proteins AT3G03800 59.554 9.96e-123 352