Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g1082 ATGGCTGACATGGACCGCGCTTCTGATGATTTTTCTGCAGATTCTACAGAGCAAACCAGTCAAGCTTCCAAGGCTGATTTTTCTGAAGATGAGGAAACCCTTATAACCAGGATGTACAATCTGGTTGGTGAGAGGTGGTCTTTGATTGCTGGAAGAATCCCTGGAAGAACAGCAGAAGAAATAGAGAAGTACTGGACTTCAAGATGCTCAACCAGTGAATAA 222 0.4369 MADMDRASDDFSADSTEQTSQASKADFSEDEETLITRMYNLVGERWSLIAGRIPGRTAEEIEKYWTSRCSTSE 73
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g1082 73 MobiDBLite consensus disorder prediction 1 29 - -
Lele31g1082 73 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 22 69 - -
Lele31g1082 73 SUPERFAMILY Homeodomain-like 24 68 IPR009057 -
Lele31g1082 73 SMART sant 23 71 IPR001005 -
Lele31g1082 73 FunFam MYB-like transcription factor 26 68 - -
Lele31g1082 73 CDD SANT 27 65 IPR001005 -
Lele31g1082 73 ProSiteProfiles Myb-like domain profile. 19 69 IPR001005 -
Lele31g1082 73 Pfam Myb-like DNA-binding domain 26 66 IPR001005 -
Lele31g1082 73 Gene3D - 26 73 - -
Lele31g1082 73 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 24 73 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g1082 Lele-ChrLele31 17634502 17635100 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g1082 19 70 MYB Transcription Factor Family AT5G14750 44.231 5.79e-15 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele31g1082 Myb_DNA-binding 1.7e-08 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0463 29 2834820 2835420 Lele31g1082 31 17634502 17635100 hybridization
Lele30g0940 30 13075023 13075635 Lele31g1082 31 17634502 17635100 hybridization