Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g1027 ATGTATTTGTGCGATTCTTCTAGTTCCTTGCAAACCATACACTGCCAAGGCTTCATTACACTTTGTGGTGAAGCCTCGGTTGTGTCAGAGCCCCTATCGCGACTCTACAACAACGATCACCCCAGCAGAGAAAAGAAGGTGAAGGTAGCTACTGAATTTCAGAGGAGGGACAGACCTGGCCAGACCTTGAAGCTCCTTCTTCATCTCTCAAGCTCTCACCTTTCCCAGCACTTAGGAAACCAATACCTCTGGTTTCAAATGACTATAGGTTCCCTCTTCAGCAAAGCTGCCAGGACTTTCCATAGCTATCCTACTTCTAAGCTTCTCCTCATCTGCACTCTCAGTGGTGGAGGTGTGGTAGCGTACTCAGAATTACAATCTGATTCTGGACCTCCAAGAATTGAACCTAATGAGCGTGGGAAAAAGAGAGTAGTGGTTCTTGGAACAGGATGGGCTGGTACCAGTTTCCTTAAGGATCTGGATGCTTCGATATATGATGTCCAGGTTGTTTCGCCTCGCAACTACTTCGCATTTACTCCCTTATTACCCAGTGTGACTTGTGGGACAGTTGAAGCAAGGAGCATTGTGGAGCCAGTAAGAAACATCATAAAAAAGAGAAAAGGAGAAATTAAATTTTGGGAGGCAGAGTGTCTCAAGATTGATGCTGCAAACAAAAAAGTTTTTTGTCGATCCAATATTGATGCCAACTTAGTGGGAAGTGGCGAATTTTCTCTGGAATATGACTTTTTGGTTGTAGCAACAGGTGCGCAAGTGAATACCTTTAACACTCCAGGTGTCAAGGAGAACTGTCATTTTTTAAAGGAGGTGGAGGATGCTCAGAGGATCAGAACTTCTGTGATAGATTGCTTCGAGAAGGCCATTCTTCCTAGTTTAACTGAAGAAGAGCGACGAATAAATCTTCATTTTGTAATTGTTGGGGGTGGTCCAACTGGTGTGGAATTTGCTGCTGAGCTTCATGATTATGTCCATGAAGATCTATCTAAATTATACCCAATAGCTAAAGATTTTGTGAAAATAACAATGATCCAATCAGGAGATCACATCTTGAACACGTTTGATGAAAGAATCAGTACATTTGCTGAGCAGAAATTCAGCAGAGACGGTATAGAAGTTCAAACAGGATGCCGAGTTACCAGTGTGACTGATAAGGAAATTAAAATGAAGGTAAAATCAACAGGAGAGGTTTTCTCAATACCTCATGGATTGGTAGTCTGGTCCACTGGCATTGGGACTCTTCCAGTTGTGAGCGATTTCATGGAACAAATTAATCAGGCTAATAGAAAGGTCCTGCAGACTGATGAATGGTTACGGGTGATAGGATGTGAAGCCGTGTACGCTATTGGGGACTGTGCTTCAATACATCAACGTAAAATCATGGATGACATCTCAATCATATTCAAAGCTGCGGACAAGGACAACTCTGGTACCTTAACCATTAAAGAATTCAAGGATGTAATGGATGACATCATCTTGAGATATCCCCAAGTGGAACTATATCTGAAGAGCAAACATATGCTTGATGTGGCTGATCTGTGGAAAGATCCTCAGGGGAAAGAGAGAGAGGAAGTAGACATAGAAGGGTTTAAGTCAGCCCTTTGTCAAGTGGATTCACAGATGAAGAGTCTGCCAGCAACAGCACAGGTTGCTGCCCAACAAGGTGCGTATTTAGCTAGCTGCTTTAATCGCATGGATCACTGCACTGAGAATCCTGAAGGACCAATGAGATTTAGAGAATCTGGACGCCATAAGTTTCGTCCCTTCAGGTACAAGCATTTAGGTCAATTTGCTCCTCTTGGTGGCGAGCAGGCAGCTGCAGAACTTCCTGGAGACTGGGTTTCAATGGGTCACAGCACTCAGTGGCTTTGGTACTCTGTATATGCCAGCAAGCAAGTGAGCTGGCGCACAAGGGTGTTGGTGGTATCTGATTGGACAAGAAGATTCATCTTTGGAAGAGATTCAAGTCGTATCTGA 1992 0.4367 MYLCDSSSSLQTIHCQGFITLCGEASVVSEPLSRLYNNDHPSREKKVKVATEFQRRDRPGQTLKLLLHLSSSHLSQHLGNQYLWFQMTIGSLFSKAARTFHSYPTSKLLLICTLSGGGVVAYSELQSDSGPPRIEPNERGKKRVVVLGTGWAGTSFLKDLDASIYDVQVVSPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIIKKRKGEIKFWEAECLKIDAANKKVFCRSNIDANLVGSGEFSLEYDFLVVATGAQVNTFNTPGVKENCHFLKEVEDAQRIRTSVIDCFEKAILPSLTEEERRINLHFVIVGGGPTGVEFAAELHDYVHEDLSKLYPIAKDFVKITMIQSGDHILNTFDERISTFAEQKFSRDGIEVQTGCRVTSVTDKEIKMKVKSTGEVFSIPHGLVVWSTGIGTLPVVSDFMEQINQANRKVLQTDEWLRVIGCEAVYAIGDCASIHQRKIMDDISIIFKAADKDNSGTLTIKEFKDVMDDIILRYPQVELYLKSKHMLDVADLWKDPQGKEREEVDIEGFKSALCQVDSQMKSLPATAQVAAQQGAYLASCFNRMDHCTENPEGPMRFRESGRHKFRPFRYKHLGQFAPLGGEQAAAELPGDWVSMGHSTQWLWYSVYASKQVSWRTRVLVVSDWTRRFIFGRDSSRI 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g1027 663 Pfam Pyridine nucleotide-disulphide oxidoreductase 142 464 IPR023753 GO:0016491
Lele31g1027 663 SUPERFAMILY EF-hand 422 549 IPR011992 -
Lele31g1027 663 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 510 662 - -
Lele31g1027 663 ProSitePatterns EF-hand calcium-binding domain. 477 489 IPR018247 -
Lele31g1027 663 PRINTS FAD-dependent pyridine nucleotide reductase signature 144 163 - -
Lele31g1027 663 PRINTS FAD-dependent pyridine nucleotide reductase signature 247 265 - -
Lele31g1027 663 PRINTS FAD-dependent pyridine nucleotide reductase signature 308 326 - -
Lele31g1027 663 SUPERFAMILY FAD/NAD(P)-binding domain 308 461 IPR036188 -
Lele31g1027 663 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 133 493 - -
Lele31g1027 663 ProSiteProfiles EF-hand calcium-binding domain profile. 464 499 IPR002048 GO:0005509
Lele31g1027 663 PANTHER NADH DEHYDROGENASE 137 663 IPR045024 GO:0003954|GO:0006116
Lele31g1027 663 SUPERFAMILY FAD/NAD(P)-binding domain 141 360 IPR036188 -
Lele31g1027 663 Gene3D - 132 477 - -
Lele31g1027 663 Gene3D - 515 662 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g1027 Lele-ChrLele31 17256379 17262736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g1027 91 663 Chloroplast and Mitochondria Gene Families AT4G21490 66.782 0.0 794
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele31g1027 31 17256379 17262736 Lele09g0875 09 7039421 7041200 CCT
Lele31g1027 31 17256379 17262736 Lele10g0803 10 6436091 6441603 CCT
Lele31g1027 31 17256379 17262736 Lele12g0461 12 12502284 12506883 CCT
Lele29g0518 29 3140986 3145047 Lele31g1027 31 17256379 17262736 hybridization