LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele31g0999	ATGCCTGTTCCTGTTCGATTCTTTTCAAATCCATTCTTATATAAACCTCCTTCCCCTGTCTCGTCTGTTCCACAAGAAATCTCCCCACCCTTCACGTTTTGCTCTCTATATCAAAAGTTCAAAACCCATACTTCAAAATTCTATTTTTTTATAGTTATTTTCCTGGTTGAATTCTTTGACTATATTGATTCAGGGTCCTTGTGTCTTAGACTCTTGTACTCTGTTCATTTTGATCATCTTCTTCATCCGTCTCCTTTCTCTGCGCACAACACCCAAAAGGTCTCTGTTTCTCAGATGGATAGATTCATTAAAAGTGTTGATGGCACTGAAATGAGAGAAAATCCAGAGTGGAGCTTTCAGGGGCAACAATGGAAGCTAGTTTATGATGAAGCCTCCCTGTCAGATAGGCCTGAGAGTCAAATCCTATATGATCCCTCTGTTTCTGTCAATGTGCCTCCACCCTCTTCATCGTCGTCTTCAAGTATCAGACTTCCCTTTGCCCTGGACGAGTCTCCCTACCAATCTGCAGCCACAAATCATCAACCCATAAGGTCTTTCGCACTTGATCATCATCATCATCAGCAGCATATTCGGCCACTACACACTACAAAGCTATACAGAGGAGTGAGGCAACGCCATTGGGGAAAATGGGTGGCTGAGATTCGTCTTCCTAAGAGTAGAAATCGCCTCTGGTTAGGCACATTTGACACTGCAGAAGATGCTGCTCTGGCTTATGATCGTGAGGCCTTTAAGCTCAGAGGACAGAATGCTAGGCTCAATTTCCCAGACCTCTTCCTCAATAAAGCTGCAAATTCAACTGCTACTTCTTCAAAGCAGCCTGAATCAGAGGAAGAGAACCGTGAGGTTCAGGAAACTGTAGAGGCAGAGAAATTGGTTGTGGGAGAAATGGAGGCTTGGTACAGGGCGATTCCAAAAGGTTGGGGACCTGAGAGCCCAGTGTGGGATGATTTAGACACCACCAACAATCTTCTGTTTCAGTCACAGTTTGCTGTTGTGAATCAAAACCAGCAAGAGTTTGATGGGGTTAATAATAATGCTCAGAGACAAGAAGACAAGACAGGACCAGATTATTGTTCCGCTTCCTCCTCTGCTTGTCTCATGAAGCCTTTCTTCTGGAACGATTAA	1146	0.4398	MPVPVRFFSNPFLYKPPSPVSSVPQEISPPFTFCSLYQKFKTHTSKFYFFIVIFLVEFFDYIDSGSLCLRLLYSVHFDHLLHPSPFSAHNTQKVSVSQMDRFIKSVDGTEMRENPEWSFQGQQWKLVYDEASLSDRPESQILYDPSVSVNVPPPSSSSSSSIRLPFALDESPYQSAATNHQPIRSFALDHHHHQQHIRPLHTTKLYRGVRQRHWGKWVAEIRLPKSRNRLWLGTFDTAEDAALAYDREAFKLRGQNARLNFPDLFLNKAANSTATSSKQPESEEENREVQETVEAEKLVVGEMEAWYRAIPKGWGPESPVWDDLDTTNNLLFQSQFAVVNQNQQEFDGVNNNAQRQEDKTGPDYCSASSSACLMKPFFWND	381

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele31g0999	381	MobiDBLite	consensus disorder prediction	271	292	-	-
	Lele31g0999	381	Pfam	AP2 domain	206	254	IPR001471	GO:0003700\|GO:0006355
	Lele31g0999	381	Gene3D	AP2/ERF domain	205	263	IPR036955	GO:0003700\|GO:0006355
	Lele31g0999	381	CDD	AP2	204	264	IPR001471	GO:0003700\|GO:0006355
	Lele31g0999	381	SUPERFAMILY	DNA-binding domain	205	263	IPR016177	GO:0003677
	Lele31g0999	381	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061	121	293	-	-
	Lele31g0999	381	SMART	rav1_2	205	268	IPR001471	GO:0003700\|GO:0006355
	Lele31g0999	381	Coils	Coil	339	359	-	-
	Lele31g0999	381	PRINTS	Ethylene responsive element binding protein signature	206	217	IPR001471	GO:0003700\|GO:0006355
	Lele31g0999	381	PRINTS	Ethylene responsive element binding protein signature	228	244	IPR001471	GO:0003700\|GO:0006355
	Lele31g0999	381	FunFam	Ethylene-responsive transcription factor 2	204	263	-	-
	Lele31g0999	381	ProSiteProfiles	AP2/ERF domain profile.	205	262	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele31g0999	Lele-ChrLele31	17082915	17084060	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele31g0999	194	325	AP2-EREBP Transcription Factor Family	AT4G28140	58.273	3.88e-49	166

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Lele31g0999		AP2	2.1e-12	CL0081