Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g0991 ATGATCCTTACGTTGTATATACTTCTGTTTTTCAGATTTAGACATCCAAAAGATCACATTGTAAACCTGAAAATGGCTGCTTTAGATCAGTATTTTGGGGAGGCCGTGTCCCAAACTGATTCCTTTGGTGAAGATAACTCTTATTCAGAAAAGTGGGAATCTGGTGCAGATTCTGATAGAAATGACTCTAATGGCTTTGACTGCAATATCTGCTTGGACTGTGTGCAAGATCCAGTGGTCACTCTTTGTGGTCATCTCTACTGCTGGCCCTGCATTTACAAGTGGCTTGATTTTCACAATCTTTCCAACGAAGAAAATGGCGAAGAACAGAGTCCGCCACAGTGTCCGGTATGTAAAACAGAAGTTTCCCAATCCTCGCTCGTTCCACTCTATGGCCGAGGCCAAACCACAAACCCTTCCTCAGGCAAGTCCCACCATGTGAGTACTATGATCCCACAAAGACCACATGGTCCTTTGTCCATGTTTGATCCTCGAAGATCATTTAATGCAACCACCAGTGCAGTTCCACACCGGTCTTCCCAATATTATCATGGCCATTATCCTTATTATCATCATCCTCAACAGTTCAACTCAATCCCTAGTAGTTCCAACTCAGGAATGCTTGGCATGGGCATGGATGGTGCACTAAGAAACGCATTTGATTCAAGAATTGGTGTGTTTGGTGAGATGATATATGCAAGAGTGTTTGGGAACCAAGTGACCAACTTATATTCTTACCCTAATACATATAATCTAGCAGGGAACAGTAATCCAAGGATCAGAAGGCATTTGATGCAAGCTGACAAGCAACTCAATAGAATCTGCTTTTTCCTGCTCTGTTCTTTAGTTCTGTGTCTTCTCTTATTCTGA 870 0.4241 MILTLYILLFFRFRHPKDHIVNLKMAALDQYFGEAVSQTDSFGEDNSYSEKWESGADSDRNDSNGFDCNICLDCVQDPVVTLCGHLYCWPCIYKWLDFHNLSNEENGEEQSPPQCPVCKTEVSQSSLVPLYGRGQTTNPSSGKSHHVSTMIPQRPHGPLSMFDPRRSFNATTSAVPHRSSQYYHGHYPYYHHPQQFNSIPSSSNSGMLGMGMDGALRNAFDSRIGVFGEMIYARVFGNQVTNLYSYPNTYNLAGNSNPRIRRHLMQADKQLNRICFFLLCSLVLCLLLF 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g0991 289 CDD RING-HC_AtRMA_like 66 119 - -
Lele31g0991 289 SUPERFAMILY RING/U-box 57 125 - -
Lele31g0991 289 Pfam Zinc finger, C3HC4 type (RING finger) 68 118 IPR018957 GO:0046872
Lele31g0991 289 MobiDBLite consensus disorder prediction 40 59 - -
Lele31g0991 289 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 34 136 IPR013083 -
Lele31g0991 289 SMART ring_2 68 118 IPR001841 -
Lele31g0991 289 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 30 286 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lele31g0991 289 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 51 132 - -
Lele31g0991 289 ProSiteProfiles Zinc finger RING-type profile. 68 119 IPR001841 -
Lele31g0991 289 ProSitePatterns Zinc finger RING-type signature. 83 92 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g0991 Lele-ChrLele31 17045052 17045921 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g0991 57 289 C3H Transcription Factor Family AT4G28270 38.397 3.34e-44 147