LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele31g0981	ATGGGCTGCATATGTTCCAAGACATCAGCTGTGGAAGACAGCCGGGAAGATTTGACGAAGAAATCATTATCTAGCAAGAGAGGGTCAGAGCTGCGTGTTTCAAGGTTGAATTCCTCTAAAAGAAACGAGGGGGTTTGGGCAACAGATAAGTTAGATGGAAGTGATGTGAAGATTTCATTGATTGACAAGAAAACCAATGGCGCATTTCAGTTGTATGATGATCAAGTGGGGAATAAGGAAATAGAGAAGCCTGAATTAACAGTCCTTAACAATCCCGGTCTTGGAAAGGTTCCAAAGGCTGCAGAAGGAGAGCAAGTTGCAGCGGGATGGCCGAGTTGGCTTTCTTCTGTGGCCGGTGAAGCTATCAAGGGATGGATACCTCGAAGTGCCAATACTTTTGAGAGGTTAAATAAAATTGGCCAAGGAACTTACAGTACCGTTTATAAAGCACGTGATGTGACTCACCAAAAGATTGTTGCTTTAAAGAGAGTTCGGTTTGATAATCTTGATCCTGAGAGTGTAAAGTTTATGGCAAGGGAAATCCTCCTTCTGCGTAGACTCGACCATCCAAATATTATCAAGTTGGAAGGCTTGATAACATCTCAGACCTCTCGCAGCCTGTACCTCATTTTTGAGTATATGGAGCATGATCTTTCTGGACTAGCATCATGTCCTGGCATCAAGTTTTCTGAACCACAGGTTAAGTGCTACATGCAACAACTTCTTAGTGGATTGGATCATTGTCATAGTCGTGGTGTCCTCCACCGTGACATAAAGGGCTCAAATCTTCTCATTGACAACAATGGCATCTTAAAAATTGCGGATTTTGGGTTGGCAAGTTTCTTTGACCCCAATCATAGTGTTCCATTGACCAGTCGTGTAGTTACTCTCTGGTATAGACCACCAGAGCTTCTACTTGGAGCATCTCATTATGGAGTCGCGGTAGATTTGTGGAGCATTGGTTGCATACTTGGGGAACTATATACTGGAAGGCCTATATTGGCAGGAAAAACTGAGGTTGAGCAACTGCACAGGATTTTCAAGCTTTGTGGATCACCATCTGAGGACTATTGGCTTAAACAGCGATTGCCACATGCTGCAGTATTCAGGCCTCCTCACCGATACAGAAAATGTATTACAGAAACATTTAAAGAATATCCATCTGCTTCGGTGAGACTTATAGAGACACTACTTTCTATAGATCCTGCACAACGAGGGACAGCAGCAGGTGCTCTAAAAAGTGAGTTCTTCACTACAGATCCCCTTGCTTGTGATCCATCAAGTTTACCAAAGTATCCTCCCAGCAAAGAGATTGATTCTAAATTACGGGATGAAGAAACCAGAAGGCAAGTAGTTAGAAAAGAAAAGGAACCGGGGGTAACTATTCCATCAAAGCACAATGTCGTTGGGCCACGCATATCAACACAGCAAGGAGGGCAACATTCCAATTCAAAGAGCCGAAGTGAAGTGTTTAACAACAACCCCCACAGAGAACCTGTTTCTGGATTTTGGGTTTATCCCCCACAAAAACAGTCACATGTTAAAGAAATGGAAAATAATTTCAGTGGACCTCTTTATAAGAGGCCTTCACATTCAGGTCCACTGGTTCCTGGTATTCAATTAGCAGCAAGGTGTGGAAAGGAAGTTGATGAAGGGCCTCTTGGTTCCAACAGAGTCAACTTGTCAAAACTATCTGGTTTAGTTGCCTCCAGGACTACTTCATCATCTGAAGATCATGAGGAAAAACCAATTTCCTTGCTGCCCAGAAAAACAATTGAAGTTAGAAAATCTGTGGAGTCAACTAATGCGTCAGAGTCAAGAAGGCATGATAGAAAACGCCATTCCCCTCGAATTGTGGATCTCAGTCAGATAGAAAATGCAAGAGGCTCTACTCAAGAATTGACTCCGGGAGGCCGTGGTGGGTACACAGAAAACAAGATATATCTCTCTGGTCCATTACTAGCTTCTTCAAACAGCATGGATCAGATGCTTAAAGAGCATGATCGAAAGATCCAAGAATTTTCAAGACGAGCACGAATTGACAAGTCAAGAGGTGGGAAAATTCGTGCACTGAGAAAGTAG	2082	0.4304	MGCICSKTSAVEDSREDLTKKSLSSKRGSELRVSRLNSSKRNEGVWATDKLDGSDVKISLIDKKTNGAFQLYDDQVGNKEIEKPELTVLNNPGLGKVPKAAEGEQVAAGWPSWLSSVAGEAIKGWIPRSANTFERLNKIGQGTYSTVYKARDVTHQKIVALKRVRFDNLDPESVKFMAREILLLRRLDHPNIIKLEGLITSQTSRSLYLIFEYMEHDLSGLASCPGIKFSEPQVKCYMQQLLSGLDHCHSRGVLHRDIKGSNLLIDNNGILKIADFGLASFFDPNHSVPLTSRVVTLWYRPPELLLGASHYGVAVDLWSIGCILGELYTGRPILAGKTEVEQLHRIFKLCGSPSEDYWLKQRLPHAAVFRPPHRYRKCITETFKEYPSASVRLIETLLSIDPAQRGTAAGALKSEFFTTDPLACDPSSLPKYPPSKEIDSKLRDEETRRQVVRKEKEPGVTIPSKHNVVGPRISTQQGGQHSNSKSRSEVFNNNPHREPVSGFWVYPPQKQSHVKEMENNFSGPLYKRPSHSGPLVPGIQLAARCGKEVDEGPLGSNRVNLSKLSGLVASRTTSSSEDHEEKPISLLPRKTIEVRKSVESTNASESRRHDRKRHSPRIVDLSQIENARGSTQELTPGGRGGYTENKIYLSGPLLASSNSMDQMLKEHDRKIQEFSRRARIDKSRGGKIRALRK	693

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele31g0981	693	FunFam	probable serine/threonine-protein kinase At1g54610	120	215	-	-
	Lele31g0981	693	Gene3D	Transferase(Phosphotransferase) domain 1	221	456	-	-
	Lele31g0981	693	SMART	serkin_6	133	417	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele31g0981	693	CDD	STKc_CDK9_like	133	417	-	-
	Lele31g0981	693	SUPERFAMILY	Protein kinase-like (PK-like)	126	423	IPR011009	-
	Lele31g0981	693	ProSitePatterns	Protein kinases ATP-binding region signature.	139	162	IPR017441	GO:0005524
	Lele31g0981	693	MobiDBLite	consensus disorder prediction	595	616	-	-
	Lele31g0981	693	MobiDBLite	consensus disorder prediction	436	461	-	-
	Lele31g0981	693	MobiDBLite	consensus disorder prediction	425	494	-	-
	Lele31g0981	693	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	253	265	IPR008271	GO:0004672\|GO:0006468
	Lele31g0981	693	Gene3D	Phosphorylase Kinase; domain 1	127	220	-	-
	Lele31g0981	693	FunFam	probable serine/threonine-protein kinase At1g54610	216	457	-	-
	Lele31g0981	693	MobiDBLite	consensus disorder prediction	662	685	-	-
	Lele31g0981	693	PANTHER	CELL DIVISION PROTEIN KINASE	131	423	-	-
	Lele31g0981	693	ProSiteProfiles	Protein kinase domain profile.	133	417	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele31g0981	693	Pfam	Protein kinase domain	133	417	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele31g0981	693	MobiDBLite	consensus disorder prediction	659	693	-	-
	Lele31g0981	693	MobiDBLite	consensus disorder prediction	468	494	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele31g0981	Lele-ChrLele31	16988353	16992701	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele31g0981	125	480	Core Cell Cycle Gene Families	AT5G10270	46.505	4.87e-112	345

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Lele31g0981		Pkinase	6.1e-67	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele17g1135	17	21563113	21570059	Lele31g0981	31	16988353	16992701	hybridization
	Lele30g0847	30	12540688	12544601	Lele31g0981	31	16988353	16992701	hybridization