Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele31g0972 | ATGCAAGGACGAAAACACCCTCAACAGACCATTGGCCGTCCAGTTCAGTCCTTCCCACCAAGCCACCATCTGCATCCTTTTCTTGCCGTAACATCTGATTCCGAGCTCCTCTCTTTCTTACTTCTCTTCGTTATATATAATAATACGAAAAGTAAAAAAAATCACGCAAGCGAGAAACTAACAATCCAAAATCTCATCTTGATTCTTCTTCCTCTTCTTCTTCTTCGTCGTAGTTCGCTCCCTCCCTCTCTCATTCTTCTCTCTTCTCTCATCAGTTTCGCAAGCAGATATATAGAGCAGCGAGTGAGCATTTTACCAATCCCTCTTTCTCAAGCACCAATGCCTGCGCAGAAGCGGTCTTTGCCGGAGTCTACAGACGATGGGGAGGTCTCAGAACTTTACAACCACCGTCATGCGAAGCAATCTCATCGGGACCGAGAGCTACAAGGCGAGGAAAGGAGGGCAGAGGAAGCTGAGCAAGGGGAGCTTGGTGAAGGGGAAGAAGAAGGACATCAGAACGAGCAAGAGCAGGATAAGGAGGAGAAAGCAGAGGATTCTGAGGAAAGCCCATATTCTGAACCCGAAGAGAAACCTGAATTTGTGTTTGTTGAACTTTTGGAAATTCGTAAAGATGTCCAATGTCCTATTTGCCTTGGTATTATCAAGAAAACACGCACTGTCATGGAATGCTTGCACCGGTTTTGCAGGGAATGCATTGACAAGTCAATGAGACTAGGGAATAATGAATGCCCTGCTTGCCGCACACATTGTGCCAGTCGTCGTTCCTTGAGAGATGATCCAAACTATGATGCTCTAATTGCTGCTTTATATCCAGATATTGAGAAGTATGAGGAAGAGGAGCTTGAATTTCGTGAAGAGGAGAAGACCCGCAATAAGCAGATTCAAGCTACAATTGCAAAAGTGGTTCAACGGCAATCTGAAGCACTGGTTAAGAGGCGTAATAAGGATACACCACCAGGTGCATTTGTCACAAGGTCACAGCGTAATCAAAGGAATACGAGGAGACAAAATCATGGAATTGATCAAGGATCAGAAGACAATGAAGAGGAAAATGAAAATAATGGAGAAAAGGACTCATCCTCCACTGATGAGCGGAGTGCAGAACCAAAGAAAAAGCGAAAGAGAGGGACAAGAGTTCGTATCCCCCTGCCTTCCTCATCAATGGCAAGCCCTGATGGTGGATTTATAGAGAGTGATGTCGACATAATGAGAGAAAATCGAGGAATTTCTTCAAGGCATCTGTCAAAACCTCAGAAGCTTACTTGGGGAAGGGGTGGTTTTAGGAGTCACATCCGACATGGCAGCGGCAGCGGTAGCTCTAGCAAGAATTCCCGCGTTAGTCGCGTGTCTAAGTTTGTTGAATATTTAAGAAGCTTAGATGAAAACACAGATGAGTATGATATCCATCTTATGCTTGTTTCTTTGGACAAAGAAAGTATACCAAGTTTGCAGCAGCCTCACCTTTGCTGTCGGCCAACTTTGTCCGTCAAGCACCTTTGTGAATATATTGCTCGTCAGACCTTGTTGTCAGCTGAAGAAGTCGAGATATTGGCGGTTAAAGGATGCTGCAGCATCATCTGTGATAAGTCAGCTGATGAGGCTTCTGCCTTGCTAAATGACGAGCTTACTACACTGATTGTAGATCCCTGCAAAGATGAACTGGAAATTTTGCAAGTACAAGAAACTTTGGCTGGGCTCAAGTCCAAATGCATATCTAAAATGGAGCACCTAATTCTGGCATTTAGGAGGAAGGAGAAAATATAG | 1785 | 0.4448 | MQGRKHPQQTIGRPVQSFPPSHHLHPFLAVTSDSELLSFLLLFVIYNNTKSKKNHASEKLTIQNLILILLPLLLLRRSSLPPSLILLSSLISFASRYIEQRVSILPIPLSQAPMPAQKRSLPESTDDGEVSELYNHRHAKQSHRDRELQGEERRAEEAEQGELGEGEEEGHQNEQEQDKEEKAEDSEESPYSEPEEKPEFVFVELLEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIEKYEEEELEFREEEKTRNKQIQATIAKVVQRQSEALVKRRNKDTPPGAFVTRSQRNQRNTRRQNHGIDQGSEDNEEENENNGEKDSSSTDERSAEPKKKRKRGTRVRIPLPSSSMASPDGGFIESDVDIMRENRGISSRHLSKPQKLTWGRGGFRSHIRHGSGSGSSSKNSRVSRVSKFVEYLRSLDENTDEYDIHLMLVSLDKESIPSLQQPHLCCRPTLSVKHLCEYIARQTLLSAEEVEILAVKGCCSIICDKSADEASALLNDELTTLIVDPCKDELEILQVQETLAGLKSKCISKMEHLILAFRRKEKI | 594 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele31g0972 | 594 | MobiDBLite | consensus disorder prediction | 311 | 402 | - | - | |
| Lele31g0972 | 594 | CDD | RING-HC_RING1_like | 214 | 254 | - | - | |
| Lele31g0972 | 594 | Pfam | Zinc finger, C3HC4 type (RING finger) | 213 | 253 | - | - | |
| Lele31g0972 | 594 | MobiDBLite | consensus disorder prediction | 361 | 377 | - | - | |
| Lele31g0972 | 594 | ProSiteProfiles | Zinc finger RING-type profile. | 214 | 254 | IPR001841 | - | |
| Lele31g0972 | 594 | MobiDBLite | consensus disorder prediction | 417 | 451 | - | - | |
| Lele31g0972 | 594 | PANTHER | OS11G0578200 PROTEIN | 114 | 593 | IPR044592 | - | |
| Lele31g0972 | 594 | MobiDBLite | consensus disorder prediction | 134 | 179 | - | - | |
| Lele31g0972 | 594 | ProSitePatterns | Zinc finger RING-type signature. | 230 | 239 | IPR017907 | - | |
| Lele31g0972 | 594 | SUPERFAMILY | RING/U-box | 201 | 268 | - | - | |
| Lele31g0972 | 594 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 160 | 284 | IPR013083 | - | |
| Lele31g0972 | 594 | MobiDBLite | consensus disorder prediction | 134 | 197 | - | - | |
| Lele31g0972 | 594 | SMART | ring_2 | 214 | 253 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele31g0972 | Lele-ChrLele31 | 16926437 | 16932103 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele31g0972 | 207 | 277 | C3H Transcription Factor Family | AT3G23060 | 35.135 | 5.69e-07 | 50.4 |