Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g0969 ATGGGCAGTTCTGAATGCGCAGAGCACAAGTTCTACGATGATACCCACCAACTCCTCTTCCCAAAGAAATCAATGATCAGGGACATTTGCAACTACATGCCACCCAGGAAGCTCCTCACTCGCCTTGGAGCCTCCAAAACTGCTATCCACGACGTCGCCGATATGTTCATCGACTCCCCGCGGTTTTCTTCTTCCGATGAGACCCTTCTGCGGAAATTCCTTCCCCACAACAACCTCACCGAAGAATCCGATGACGACGATCCCGACCCGTACCCCTCCGAACACTTCCGAATGTACGAGTTCAAGGTCCGCCGGTGCAATCGCAGCCGGAGCCACGACTGGACTGACTGCCCCTTTGCTCATCCCGGTGAAAAGGCTCTCCGGCGCGATCCCAGAAAGTACCACTACTCCGGCACTATCTGTTCCGAGTACCGCCGCAGCGGCGCATGTAGACGTGGCGATAGTTGCGAGTTTGCACACGGCGTGTTTGAATGTTGGCTTCACCCAGCGAGGTACAGAACGGAAGCTTGTAAGGATGGTAAGAATTGCAAGCGAAAGGTATGCTTCTTCGCTCACACACCTCGCCAACTGAGAATTTTGCCGGTGAATTGCTCTTCTTCTTCACCTGATCAAATCTCAGACATCAAGAAGAACAAATTCTTAAAACCCTCATTGGGATCAAACAATAATTGCTGTATGTTCTGTCATCGCTCTGCTAATAACTCTAATTCTTCTCCGACTTCCACTCTCTTCGGGATGTCCCACTTTTCACCACCGTTGTCGCCGTCGTCGCCCCCTGTGTCGCCGATCGAAACAGGAACCTCTTCAAATGGTTTATCACCAATTTCTCGATACAGTGAAAGAATTAACGGATCTGAGGCTTATAATAATAATAATAATCAGGGTATGGTCATGAGCTACAGGGATGCTCTCACGGAGTTGATGAGCTCCTTAGAAGTTCTGAATTTCAATGAAGCTTCTTCATCACCACCAACTGAAATTTCTGCAACTGCCACTAATAATAAGTCTCCAAATCTGCACTGGCTTGACGTTTCTTGCTTTAACTGTGATGATCATCAGTTCATTCCTTCACTTTCTACTTCTCATCAAATTTCCCAGAACCCATCAACAGCTTTATCTGCCTCAAGCAAATTTTCAACTGGATTTTTTTTTAACGAGAGAAGAATCTTTGGTGACGATGATAATAATGGGTCTTCATGTGCAACTCCAGATCTGGGTTGGGTCAATGACCTGCTAATATAG 1263 0.4727 MGSSECAEHKFYDDTHQLLFPKKSMIRDICNYMPPRKLLTRLGASKTAIHDVADMFIDSPRFSSSDETLLRKFLPHNNLTEESDDDDPDPYPSEHFRMYEFKVRRCNRSRSHDWTDCPFAHPGEKALRRDPRKYHYSGTICSEYRRSGACRRGDSCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHTPRQLRILPVNCSSSSPDQISDIKKNKFLKPSLGSNNNCCMFCHRSANNSNSSPTSTLFGMSHFSPPLSPSSPPVSPIETGTSSNGLSPISRYSERINGSEAYNNNNNQGMVMSYRDALTELMSSLEVLNFNEASSSPPTEISATATNNKSPNLHWLDVSCFNCDDHQFIPSLSTSHQISQNPSTALSASSKFSTGFFFNERRIFGDDDNNGSSCATPDLGWVNDLLI 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g0969 420 MobiDBLite consensus disorder prediction 267 282 - -
Lele31g0969 420 SUPERFAMILY CCCH zinc finger 134 165 IPR036855 GO:0046872
Lele31g0969 420 Gene3D - 129 210 - -
Lele31g0969 420 ProSiteProfiles Zinc finger C3H1-type profile. 136 163 IPR000571 GO:0046872
Lele31g0969 420 MobiDBLite consensus disorder prediction 262 282 - -
Lele31g0969 420 PANTHER UNKEMPT FAMILY MEMBER 47 419 IPR045234 -
Lele31g0969 420 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 139 161 IPR000571 GO:0046872
Lele31g0969 420 SMART c3hfinal6 171 194 IPR000571 GO:0046872
Lele31g0969 420 SMART c3hfinal6 135 162 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g0969 Lele-ChrLele31 16905429 16906691 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g0969 91 198 C2H2 Transcription Factor Family AT5G07500 68.519 1.70e-49 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele31g0969 zf-CCCH 2.6e-08 CL0537