LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele31g0967	ATGGCTGTGAAGGAGAAGCTCGGCATCAAACACACCAAGCCAAATATTGCCAAGGATGTTGTTCACTACAGGGGCGTCCGCAAGAGGCCCTGGGGCCGTTACGCCGCCGAAATACGAGATCCCGGCAAGAAGAGTCGCGTTTGGCTCGGCACGTTCGACACGGCGGAAGAAGCTGCAAAAGCCTACGACACCGCCGCCCGGCAATTCCGTGGCCCCAAGGCTAAGACCAACTTTCCTCTGCCCAACGTGAGCGGTCCCAACGGAAATAACCAGAGCCCAAGCGAGACTAGCACCGTGGAATCATCCAGCCGAGATGGATCGGAGCGTGAGATAACGCGCCGTTGTGACGTTGGCGTTGTCGTGGATCGGTTTCCGTTTCTTCCGATTCAGCCACACCACGTGGCGTTTGGTTGCAGCGGTCGTGGTGGTGTGGCGGGTTTGGTGCCATCAGCTGTGCGTCCGGTTTTCTTTTTTGAGCCGGCTGCAGGTGGTAGGGCCGAGTTTGTGGGTCAGCCATATCCATTGCCGGTCGACGTTACGACCAAAATGAGAAGTGCGGCTTCGAGTGACTCCGATTTGTCCTCCGTCGTTGATTGTCAGCCTAAGAAAGCCATCAATCTTGATCTTAACCTGGCTCCTCCATCGGACGATTGA	654	0.5657	MAVKEKLGIKHTKPNIAKDVVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAARQFRGPKAKTNFPLPNVSGPNGNNQSPSETSTVESSSRDGSEREITRRCDVGVVVDRFPFLPIQPHHVAFGCSGRGGVAGLVPSAVRPVFFFEPAAGGRAEFVGQPYPLPVDVTTKMRSAASSDSDLSSVVDCQPKKAINLDLNLAPPSDD	217

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele31g0967	217	MobiDBLite	consensus disorder prediction	80	101	-	-
	Lele31g0967	217	MobiDBLite	consensus disorder prediction	68	110	-	-
	Lele31g0967	217	ProSiteProfiles	AP2/ERF domain profile.	22	79	IPR001471	GO:0003700\|GO:0006355
	Lele31g0967	217	CDD	AP2	22	79	IPR001471	GO:0003700\|GO:0006355
	Lele31g0967	217	Pfam	AP2 domain	22	71	IPR001471	GO:0003700\|GO:0006355
	Lele31g0967	217	PRINTS	Ethylene responsive element binding protein signature	45	61	IPR001471	GO:0003700\|GO:0006355
	Lele31g0967	217	PRINTS	Ethylene responsive element binding protein signature	23	34	IPR001471	GO:0003700\|GO:0006355
	Lele31g0967	217	SMART	rav1_2	22	85	IPR001471	GO:0003700\|GO:0006355
	Lele31g0967	217	FunFam	Ethylene-responsive transcription factor 2	21	80	-	-
	Lele31g0967	217	PANTHER	AP2 DOMAIN CLASS TRANSCRIPTION FACTOR	17	181	-	-
	Lele31g0967	217	SUPERFAMILY	DNA-binding domain	22	80	IPR016177	GO:0003677
	Lele31g0967	217	Gene3D	AP2/ERF domain	21	80	IPR036955	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele31g0967	Lele-ChrLele31	16892509	16893162	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele31g0967	1	217	AP2-EREBP Transcription Factor Family	AT5G44210	45.333	1.53e-48	156

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Lele31g0967		AP2	6e-15	CL0081