Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g0948 ATGGACGAGGGAGAAATTTCAAATATCGGTTTTCAGCATCAGAACCACCCACCAACCGCCGCATCCTCTAACAATACCAATAATCCTCCTCCGATTCTCAAGAGAAAGAGAAACCTGCCAGGAAACCCAGATCCTGAAGCGGAAGTGATAGCCCTATCGCCCAAGACACTAATGGCGACGAACAGATTTCTGTGTGAAATTTGTGGGAAAGGGTTCCAGAGGGATCAAAATCTGCAACTTCATCGACGTGGACATAATCTTCCATGGAAGCTGAAGCAGAGGACAAGTAAAGAAGTGAAAAAGCGAGTGTATGTGTGCCCAGAAAAAAGCTGCGTTCACAACCACCCATCGAGGGCTCTTGGAGATTTGACAGGAATCAAAAAGCACTTCTGCAGAAAGCACGGCGAGAAGAAGTGGAAGTGTGAGAAGTGCTCAAAGCGTTACGCTGTTCAGTCTGATTGGAAAGCCCACTCCAAAACCTGTGGTACTAGGGAATACAAATGTGACTGTGGCACCATCTTTTCACGGAGGGATAGCTTCATCACGCATAGGGCCTTCTGTGATGCCCTAGCAGAAGAAACAGCAAGAGTGAACGCAGCTTCCAACAACATAAGTTACAGTACTATAATTGGAGCCGCTTCTTCCCTAGGACCAAACAACAACATGGCAACCCATTTTCCTTCAATCTTCAAGCCAATTTCAAACACCAATAATACCGAGGAACAAGCAAATAATCAAACGCCTATTAGAGGGCTATCTCTATGGATGGATCATCATCATCAGACAATAATGCCTAGTAATGGAAATATCAGTAACCCTACTCATGATCGTCAGAATATTCATCATCATCATCATCATCAACTTGGGAGCCACCAGCTTGTTTCACATCCACAGCAGCTAAATTGGGTGTTTGGGAACAAGCTCATTTCAAGTTCTTCGGCCTCTTGCCAAGAGCTAGCAAGCACCTCAATTGGAATGATTAGTGTTCCCTCCTTGTATAGCTCCCAACATCATCATCAAACATACCAAACAACATCGGCAAACATGTCGGCGACTGCGCTGTTGCAGAAAGCTGCTCAGATAGGGGCCACATCGACCACCTGTGACCCCACATTTCTGGGGAGCTTAGGGATGAAACGTAGCAGTGAAGGTGGTGGTCAAGAAGATGATCATGGAAGTGATAACAAGTATTATGGGATGTACAGTTCTGGTTTAGGTTCTGGTTCGGTTCTCACCAATGTTGGTGGTGGTGGAGGAAGTGATCAGACGACAGAGAACAACAACTCGGCTAGTGAAATGTCACAAATGCCCCCAGCAAAACGCCCGAGGCAGGTATTACAGAATGAAGAAGGAGGGCAAACTAGGGATTTCCTTGGCGTTGGTGGTGTGCAAACCATTTGCCACCCTTCATCAATCAATGGATGGGTCTGA 1431 0.4612 MDEGEISNIGFQHQNHPPTAASSNNTNNPPPILKRKRNLPGNPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVKKRVYVCPEKSCVHNHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVNAASNNISYSTIIGAASSLGPNNNMATHFPSIFKPISNTNNTEEQANNQTPIRGLSLWMDHHHQTIMPSNGNISNPTHDRQNIHHHHHHQLGSHQLVSHPQQLNWVFGNKLISSSSASCQELASTSIGMISVPSLYSSQHHHQTYQTTSANMSATALLQKAAQIGATSTTCDPTFLGSLGMKRSSEGGGQEDDHGSDNKYYGMYSSGLGSGSVLTNVGGGGGSDQTTENNNSASEMSQMPPAKRPRQVLQNEEGGQTRDFLGVGGVQTICHPSSINGWV 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g0948 476 SUPERFAMILY beta-beta-alpha zinc fingers 62 159 IPR036236 -
Lele31g0948 476 MobiDBLite consensus disorder prediction 8 32 - -
Lele31g0948 476 MobiDBLite consensus disorder prediction 378 397 - -
Lele31g0948 476 MobiDBLite consensus disorder prediction 409 447 - -
Lele31g0948 476 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 85 IPR013087 -
Lele31g0948 476 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 17 464 IPR031140 -
Lele31g0948 476 SMART c2h2final6 104 134 IPR013087 -
Lele31g0948 476 SMART c2h2final6 139 159 IPR013087 -
Lele31g0948 476 SMART c2h2final6 63 85 IPR013087 -
Lele31g0948 476 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Lele31g0948 476 Gene3D Classic Zinc Finger 96 187 - -
Lele31g0948 476 MobiDBLite consensus disorder prediction 1 46 - -
Lele31g0948 476 FunFam protein indeterminate-domain 12-like 42 110 - -
Lele31g0948 476 Gene3D Classic Zinc Finger 59 86 - -
Lele31g0948 476 MobiDBLite consensus disorder prediction 409 435 - -
Lele31g0948 476 FunFam protein indeterminate-domain 5, chloroplastic-like 117 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g0948 Lele-ChrLele31 16769263 16771394 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g0948 30 476 IDZ Gene Family AT1G03840 52.673 2.76e-144 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele31g0948 None None None