Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g0921 ATGGAAGCATTTGATTGGAGCTCTGGTGTTCGGGGAAATGCCTCAGAGACTAGTCCACATGGTTTTCTGGATAATTCTGCTGTAATAGGAAGAGGGTTTACTTCATCTTCGTCTTTGGTGTTGGACAGAGAGAAGGGAGAGCTTGTGGCTGCTCCGGTCAAACTGGAACGCAGGAGTGTCTCCACTGAGAGAAGTGTTGAAAATTTGAAGAACCATAGCGAAGCAGAGAGGAGGAGGAGAGCAAGGATTAATTCACATCTTGACACTCTTAGGAGTATAGTTCCTGGTGCTAACAAGATGGACAAAGCGTCGTTACTTGGCGAGGTTATCAGACATTTGAAAGAGCTGAAAAGGAATGCAGCTCAAGCATGTGAGGGTTTGATGATACCAAAGGACAGTGATGAAATAAGAGTTGAAGAACAAGAAGGTGGTTCAGATGGCTTCCCTTATTCGATCAAAGCATCACTATGCTGTGAATATAAACCTGGGTTGTTGCCTGAATTAAGACAAGCACTTGATGCTCTTCATCTTAAGATAATGATGGCAGAAATTGCAACGTTAGGAGGCAGAATGAAGAATGTGTTTGTTATAATTAGCTGTAAAGAACACAATATTAATGAAGATGCTTCGTATCGTCAGTTTCTTGCAGACTCTGTTCATCAAGCTATTAGGTCTGTACTTGATAGATACTCTTGTTCAGAAGATCTCTTAGGAACCAGAAAGAGACGGAGATTTTCTATATTCAGTTCATCACCTTTCGGAGATTTCTTGTGA 774 0.416 MEAFDWSSGVRGNASETSPHGFLDNSAVIGRGFTSSSSLVLDREKGELVAAPVKLERRSVSTERSVENLKNHSEAERRRRARINSHLDTLRSIVPGANKMDKASLLGEVIRHLKELKRNAAQACEGLMIPKDSDEIRVEEQEGGSDGFPYSIKASLCCEYKPGLLPELRQALDALHLKIMMAEIATLGGRMKNVFVIISCKEHNINEDASYRQFLADSVHQAIRSVLDRYSCSEDLLGTRKRRRFSIFSSSPFGDFL 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g0921 257 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 67 122 IPR036638 GO:0046983
Lele31g0921 257 PANTHER TRANSCRIPTION FACTOR BHLH30 31 247 IPR045847 GO:0003700|GO:0006355
Lele31g0921 257 MobiDBLite consensus disorder prediction 1 21 - -
Lele31g0921 257 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 67 116 IPR011598 GO:0046983
Lele31g0921 257 SMART finulus 73 122 IPR011598 GO:0046983
Lele31g0921 257 Gene3D - 62 124 IPR036638 GO:0046983
Lele31g0921 257 Pfam Helix-loop-helix DNA-binding domain 71 116 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g0921 Lele-ChrLele31 16617600 16619581 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g0921 54 246 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 42.132 6.38e-36 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele31g0921 HLH 2.8e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0617 29 3771126 3782038 Lele31g0921 31 16617600 16619581 hybridization
Lele30g0779 30 12140829 12142641 Lele31g0921 31 16617600 16619581 hybridization