Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g0898 ATGGCGGCGATGAGAGCGGCAGTGGCGGCGCCTCGCGGTTTAAGGCGGCTATTCTCAACCAGTACAACTTCAACCTTCATGCCTCCTCCGCCCTCGGCGGCGGTTTCTGCTCGAGAGAAGGCCGAGCCCAGTCCCAACCTCTTCGTCTCTGGGCTTAGCAAACGTACCACTACAGAAAAGCTAAGGGAGGCATTTTCTGAGTTCGGTGAAGTTGTTAATGCTAGAATTGTAACCGACAGGGTATCAGGTTACTCCAAAGGGTTTGGCTTTGTAAGGTATGCCACCGTGGAAGAAGCTGCAAAAGGCATTGTGGGCATGGATGGAAAGTTTCTGGATGGTTGGGTTATATTTGCCGAGTATGCGAAACCGAGACCACCACCGGGACAACCTATGCCGCCTCCGTATGGCCAGCGGTGA 417 0.5396 MAAMRAAVAAPRGLRRLFSTSTTSTFMPPPPSAAVSAREKAEPSPNLFVSGLSKRTTTEKLREAFSEFGEVVNARIVTDRVSGYSKGFGFVRYATVEEAAKGIVGMDGKFLDGWVIFAEYAKPRPPPGQPMPPPYGQR 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g0898 138 PANTHER NUCLEOLAR PROTEIN 8 27 126 - -
Lele31g0898 138 SUPERFAMILY RNA-binding domain, RBD 27 136 IPR035979 GO:0003676
Lele31g0898 138 SMART rrm1_1 46 119 IPR000504 GO:0003723
Lele31g0898 138 MobiDBLite consensus disorder prediction 21 41 - -
Lele31g0898 138 FunFam RNA recognition motif-containing protein 24 133 - -
Lele31g0898 138 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 47 113 IPR000504 GO:0003723
Lele31g0898 138 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 45 123 IPR000504 GO:0003723
Lele31g0898 138 Gene3D - 19 129 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g0898 Lele-ChrLele31 16413785 16416610 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g0898 46 93 Eukaryotic Initiation Factors Gene Family AT1G34140 39.583 3.01e-06 43.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0643 29 3973282 3975562 Lele31g0898 31 16413785 16416610 hybridization
Lele30g0752 30 11944049 11946405 Lele31g0898 31 16413785 16416610 hybridization